Domain Predictions — View — Lotus Base

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PF11934

Source: Pfam

Description

Domain of unknown function (DUF3452)

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 13

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v5020940.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: retinoblastoma-related protein 1-like [Glycine max] gi\|356556778\|ref\|XP_003546699.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR013763 IPR015652 IPR024599 IPR028309 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF17 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
Lj3g3v1896330.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: retinoblastoma-related protein 1-like [Glycine max] gi\|356556778\|ref\|XP_003546699.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR013763 IPR015652 IPR024599 IPR028309 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF17 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.1 retinoblastoma-related 1; Swiss-Prot: sp\|A9UL14\|RBR_MEDSA Retinoblastoma-related protein; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|A0A0R0GFY6\|A0A0R0GFY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|A0A0R0GFY6\|A0A0R0GFY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.69