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IPR028309

Description

IPR028309 is a Retinoblastoma protein family.

<p>This entry represents the retinoblastoma protein family, including retinoblastoma-associated protein (RB, also known as pRb, RB, p1051), retinoblastoma-like protein 1 (RBL1, also known as p107) and retinoblastoma-like protein 2 (RBL2, also known as RB2 or p130). Members of this family contain a conserved domain named the 'pocket' that interacts with the LXCXE motif found in viral proteins, such as SV40 large T antigen [[cite:PUB00067962]]. Therefore, this family is also called the pocket protein family.</p> <p>In humans, RB is a tumour suppressor linked to several major cancers [[cite:PUB00067957]]. RB forms complexes with E2Fs and represses gene expression by recruiting chromatin remodeling factors, such as histone deacetylases (HDACs) to E2F-responsive promoters [[cite:PUB00067956], [cite:PUB00067953]]. This interaction regulates genes necessary for DNA replication and cell cycle. Phosphorylation of RB family by CDK and cyclin complexes leads to release of the repressor complex and enables E2F-dependent gene expression [[cite:PUB00067953]]. Apart from E2Fs, RB also interacts with other transcription factors that govern cell differentiation [[cite:PUB00067960], [cite:PUB00067959]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Regulation of transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
Biological process Regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.

Associated Lotus transcripts 14

Transcript Name Description Predicted domains Domain count
PREDICTED: retinoblastoma-related protein 1-like [Glycine max] gi|356556778|ref|XP_003546699.1| 20
PREDICTED: retinoblastoma-related protein 1-like [Glycine max] gi|356556778|ref|XP_003546699.1| 7
PREDICTED: retinoblastoma-related protein 1-like [Glycine max] gi|356556778|ref|XP_003546699.1| 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400 20
Retinoblastoma-related protein; TAIR: AT3G12280.1 retinoblastoma-related 1; Swiss-Prot: sp|A9UL14|RBR_MEDSA Retinoblastoma-related protein; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|A0A0R0GFY6|A0A0R0GFY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 20
Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|A0A0R0GFY6|A0A0R0GFY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 7.14