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Lj1g3v5021220.1

Overview

Field Value
Gene ID Lj1g3v5021220
Transcript ID Lj1g3v5021220.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi|356543662|ref|XP_003540279.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12416
17 34 18 1.50E-116 –
PANTHER
PTHR12416:SF2
17 34 18 1.50E-116 –
PANTHER
PTHR12416:SF2
66 213 148 1.50E-116 –
PANTHER
PTHR12416
66 213 148 1.50E-116 –
CDD
cd09864
68 202 135 1.06E-102 –
SUPERFAMILY
SSF88723
78 202 125 5.76E-32
IPR029060
Gene3D
G3DSA:3.40.50.1010
79 203 125 4.90E-39
IPR029060
SMART
SM00670
80 179 100 1.10E-12
IPR002716
Pfam
PF04900
105 201 97 1.50E-40
IPR006984

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0032040
Cellular component Small-subunit processome A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v5021220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5021220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.