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IPR002716 is a PIN domain.
<p>PIN domains are small protein domains identified by the presence of three strictly conserved acidic residues. Apart from these three residues, there is poor sequence conservation [[cite:PUB00059173]]. PIN domains are found in eukaryotes, eubacteria and archaea. In eukaryotes they are ribonucleases involved in nonsense mediated mRNA decay [[cite:PUB00041532]] and in processing of 18S ribosomal RNA [[cite:PUB00067507]]. In prokaryotes, they are the toxic components of toxin-antitoxin (TA) systems, their toxicity arising by virtue of their ribonuclease activity. The PIN domain TA systems are now called VapBC TAs(virulence associated proteins), where VapB is the inhibitor and VapC, the PIN-domain ribonuclease toxin [[cite:PUB00059173]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi|356543662|ref|XP_003540279.1| | 10 | ||
| – | PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi|356543662|ref|XP_003540279.1| | 10 | ||
| – | Parallel spindle [Medicago truncatula] gi|357443427|ref|XP_003591991.1| | 15 | ||
| – | RRNA-processing protein FCF1-like protein; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788500 | 15 | ||
| – | RRNA-processing protein FCF1-like protein; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788500 | 10 | ||
| – | Nuclear inhibitor of protein phosphatase 1; TAIR: AT1G34355.1 forkhead-associated (FHA) domain-containing protein; Swiss-Prot: sp|B7SY83|PS1_ARATH FHA domain-containing protein PS1; TrEMBL-Plants: tr|I1MNY3|I1MNY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0098000_LC | 15 | ||
| – | RRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700 | 10 | ||
| – | RRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700 | 15 | ||
| – | RRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|A0A151TXS1|A0A151TXS1_CAJCA rRNA-processing protein FCF1 isogeny; Found in the gene: LotjaGi3g1v0178700 | 10 | ||
| – | DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 | 26 | ||
| – | DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 | 26 | ||
| – | DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 | 24 | ||
| – | DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 | 26 | ||
| – | DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 | 25 | ||
| – | Forkhead-associated (FHA) domain-containing protein; TAIR: AT1G34355.1 forkhead-associated (FHA) domain-containing protein; Swiss-Prot: sp|B7SY83|PS1_ARATH FHA domain-containing protein PS1; TrEMBL-Plants: tr|V7BCX1|V7BCX1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0278700_LC | 7 | ||
| – | Forkhead-associated (FHA) domain-containing protein; TAIR: AT1G34355.1 forkhead-associated (FHA) domain-containing protein; Swiss-Prot: sp|B7SY83|PS1_ARATH FHA domain-containing protein PS1; TrEMBL-Plants: tr|A0A151U633|A0A151U633_CAJCA Nuclear inhibitor of protein phosphatase 1; Found in the gene: LotjaGi5g1v0278700_LC | 6 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd09880 | CDD | 1 | 6.25 |