Domain Predictions — View

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SM00670

Source: SMART

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0324239.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi\|356543662\|ref\|XP_003540279.1\|	Domains G3DSA:3.40.50.1010 IPR002716 IPR006984 IPR029060 PF04900 PTHR12416 PTHR12416:SF2 SM00670 SSF88723 cd09864	10
Lj1g3v5021220.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi\|356543662\|ref\|XP_003540279.1\|	Domains G3DSA:3.40.50.1010 IPR002716 IPR006984 IPR029060 PF04900 PTHR12416 PTHR12416:SF2 SM00670 SSF88723 cd09864	10
LotjaGi1g1v0788500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein FCF1-like protein; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp\|Q32PD0\|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr\|I3T9S6\|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788500	Domains G3DSA:3.40.50.1010 IPR002716 IPR006984 IPR029060 NON_CYTOPLASMIC_DOMAIN PF04900 PTHR12416 PTHR12416:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00670 SSF88723 cd09864	15
LotjaGi1g1v0788500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein FCF1-like protein; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp\|Q32PD0\|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr\|I3T9S6\|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788500	Domains G3DSA:3.40.50.1010 IPR002716 IPR006984 IPR029060 PF04900 PTHR12416 PTHR12416:SF2 SM00670 SSF88723 cd09864	10
LotjaGi3g1v0178700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp\|Q32PD0\|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr\|I3T9S6\|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700	Domains G3DSA:3.40.50.1010 IPR002716 IPR006984 IPR029060 PF04900 PTHR12416 PTHR12416:SF2 SM00670 SSF88723 cd09864	10
LotjaGi3g1v0178700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp\|Q32PD0\|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr\|I3T9S6\|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700	Domains G3DSA:3.40.50.1010 IPR002716 IPR006984 IPR029060 NON_CYTOPLASMIC_DOMAIN PF04900 PTHR12416 PTHR12416:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00670 SSF88723 cd09864	15
LotjaGi3g1v0178700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp\|Q32PD0\|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr\|A0A151TXS1\|A0A151TXS1_CAJCA rRNA-processing protein FCF1 isogeny; Found in the gene: LotjaGi3g1v0178700	Domains G3DSA:3.40.50.1010 IPR002716 IPR006984 IPR029060 PF04900 PTHR12416 PTHR12416:SF2 SM00670 SSF88723 cd09864	10
LotjaGi4g1v0138200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	24
LotjaGi4g1v0138200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	9.09