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| Field | Value |
|---|---|
| Gene ID | Lj1g3v5060600 |
| Transcript ID | Lj1g3v5060600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357512639|ref|XP_003626608.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 453 | 453 | 4.20E-248 | – | |
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| PANTHER | 1 | 453 | 453 | 4.20E-248 | – | |
| Phobius | 4 | 11 | 8 | – | – | |
| Phobius | 12 | 19 | 8 | – | – | |
| Phobius | 20 | 458 | 439 | – | – | |
| Gene3D | 112 | 146 | 35 | 6.20E-07 | ||
| SUPERFAMILY | 112 | 260 | 149 | 1.97E-06 | ||
| ProSiteProfiles | 115 | 149 | 35 | 8.353 | ||
| Pfam | 118 | 146 | 29 | 0.16 | ||
| ProSiteProfiles | 150 | 185 | 36 | 5.941 | ||
| Pfam | 185 | 234 | 50 | 3.90E-14 | ||
| Gene3D | 185 | 391 | 207 | 6.20E-07 | ||
| ProSiteProfiles | 186 | 220 | 35 | 11.871 | ||
| TIGRFAM | 189 | 222 | 34 | 8.00E-09 | ||
| ProSiteProfiles | 221 | 255 | 35 | 11.63 | ||
| TIGRFAM | 224 | 257 | 34 | 1.40E-07 | ||
| Pfam | 251 | 284 | 34 | 1.50E-10 | ||
| ProSiteProfiles | 256 | 290 | 35 | 12.814 | ||
| TIGRFAM | 259 | 292 | 34 | 1.80E-09 | ||
| Pfam | 290 | 339 | 50 | 7.10E-17 | ||
| ProSiteProfiles | 291 | 325 | 35 | 13.11 | ||
| TIGRFAM | 294 | 326 | 33 | 5.50E-11 | ||
| ProSiteProfiles | 326 | 360 | 35 | 13.044 | ||
| TIGRFAM | 328 | 360 | 33 | 1.20E-07 | ||
| SUPERFAMILY | 330 | 396 | 67 | 1.97E-06 | ||
| ProSiteProfiles | 361 | 395 | 35 | 8.002 | ||
| Pfam | 367 | 392 | 26 | 1.2 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v5060600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v5060600.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.