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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0636230 |
| Transcript ID | Lj2g3v0636230.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like [Cicer arietinum] gi|502183377|ref|XP_004517125.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | – | – | |
| Phobius | 1 | 23 | 23 | – | – | |
| PANTHER | 3 | 622 | 620 | 2.00E-257 | – | |
| Phobius | 24 | 33 | 10 | – | – | |
| Phobius | 34 | 51 | 18 | – | – | |
| Phobius | 52 | 649 | 598 | – | – | |
| ProSiteProfiles | 66 | 100 | 35 | 7.739 | ||
| Pfam | 89 | 146 | 58 | 0.0077 | ||
| ProSiteProfiles | 101 | 135 | 35 | 9.208 | ||
| TIGRFAM | 103 | 135 | 33 | 2.00E-04 | ||
| ProSiteProfiles | 137 | 171 | 35 | 8.287 | ||
| Pfam | 167 | 197 | 31 | 2.20E-09 | ||
| ProSiteProfiles | 172 | 206 | 35 | 10.041 | ||
| TIGRFAM | 174 | 199 | 26 | 4.50E-05 | ||
| Pfam | 209 | 257 | 49 | 1.10E-17 | ||
| ProSiteProfiles | 210 | 244 | 35 | 12.299 | ||
| SUPERFAMILY | 211 | 354 | 144 | 1.55E-07 | ||
| TIGRFAM | 212 | 245 | 34 | 1.40E-09 | ||
| ProSiteProfiles | 245 | 279 | 35 | 13.252 | ||
| TIGRFAM | 247 | 280 | 34 | 1.60E-09 | ||
| Gene3D | 259 | 367 | 109 | 1.10E-15 | ||
| ProSiteProfiles | 280 | 314 | 35 | 11.685 | ||
| Pfam | 280 | 307 | 28 | 2.80E-06 | ||
| TIGRFAM | 285 | 316 | 32 | 4.80E-09 | ||
| Pfam | 314 | 363 | 50 | 8.20E-15 | ||
| ProSiteProfiles | 315 | 349 | 35 | 12.54 | ||
| TIGRFAM | 317 | 351 | 35 | 2.40E-09 | ||
| ProSiteProfiles | 350 | 384 | 35 | 10.578 | ||
| TIGRFAM | 353 | 385 | 33 | 6.00E-06 | ||
| Pfam | 384 | 433 | 50 | 1.30E-16 | ||
| ProSiteProfiles | 385 | 419 | 35 | 12.036 | ||
| TIGRFAM | 387 | 421 | 35 | 1.30E-06 | ||
| ProSiteProfiles | 420 | 454 | 35 | 12.814 | ||
| TIGRFAM | 422 | 456 | 35 | 1.60E-09 | ||
| Gene3D | 423 | 486 | 64 | 1.10E-15 | ||
| SUPERFAMILY | 424 | 498 | 75 | 1.55E-07 | ||
| Pfam | 450 | 482 | 33 | 1.40E-11 | ||
| ProSiteProfiles | 455 | 489 | 35 | 13.121 | ||
| TIGRFAM | 458 | 489 | 32 | 1.40E-08 | ||
| Pfam | 489 | 538 | 50 | 9.70E-19 | ||
| ProSiteProfiles | 490 | 524 | 35 | 12.408 | ||
| TIGRFAM | 492 | 525 | 34 | 2.80E-08 | ||
| Gene3D | 523 | 590 | 68 | 1.10E-15 | ||
| ProSiteProfiles | 525 | 559 | 35 | 13.493 | ||
| TIGRFAM | 527 | 561 | 35 | 3.70E-10 | ||
| ProSiteProfiles | 560 | 594 | 35 | 13.822 | ||
| Pfam | 560 | 608 | 49 | 9.50E-17 | ||
| TIGRFAM | 563 | 596 | 34 | 5.60E-11 | ||
| ProSiteProfiles | 595 | 629 | 35 | 9.679 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0636230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0636230.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.