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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0727390 |
| Transcript ID | Lj2g3v0727390.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 10-like [Glycine max] gi|356561462|ref|XP_003549000.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 777 | 777 | 0 | – | |
| PANTHER | 1 | 777 | 777 | 0 | – | |
| Phobius | 1 | 68 | 68 | – | – | |
| SUPERFAMILY | 54 | 366 | 313 | 5.23E-28 | ||
| Gene3D | 58 | 366 | 309 | 5.10E-21 | – | |
| Phobius | 69 | 95 | 27 | – | – | |
| Pfam | 69 | 337 | 269 | 2.50E-22 | ||
| TMHMM | 70 | 92 | 23 | – | – | |
| ProSiteProfiles | 87 | 350 | 264 | 27.54 | ||
| Phobius | 96 | 106 | 11 | – | – | |
| TMHMM | 107 | 124 | 18 | – | – | |
| Phobius | 107 | 124 | 18 | – | – | |
| Phobius | 125 | 194 | 70 | – | – | |
| Phobius | 195 | 223 | 29 | – | – | |
| TMHMM | 200 | 222 | 23 | – | – | |
| Phobius | 224 | 290 | 67 | – | – | |
| Phobius | 291 | 315 | 25 | – | – | |
| TMHMM | 295 | 317 | 23 | – | – | |
| Phobius | 316 | 677 | 362 | – | – | |
| SUPERFAMILY | 379 | 608 | 230 | 2.02E-54 | ||
| ProSiteProfiles | 387 | 608 | 222 | 22.162 | ||
| CDD | 387 | 585 | 199 | 1.25E-102 | – | |
| Gene3D | 389 | 612 | 224 | 4.80E-64 | ||
| Pfam | 404 | 537 | 134 | 1.60E-23 | ||
| SMART | 412 | 585 | 174 | 5.60E-17 | ||
| ProSitePatterns | 510 | 524 | 15 | – | ||
| Phobius | 678 | 697 | 20 | – | – | |
| TMHMM | 678 | 700 | 23 | – | – | |
| SUPERFAMILY | 679 | 777 | 99 | 5.23E-13 | ||
| Pfam | 680 | 777 | 98 | 3.20E-10 | ||
| ProSiteProfiles | 680 | 777 | 98 | 13.213 | ||
| Gene3D | 680 | 777 | 98 | 4.20E-14 | – | |
| Phobius | 698 | 716 | 19 | – | – | |
| TMHMM | 715 | 737 | 23 | – | – | |
| Phobius | 717 | 740 | 24 | – | – | |
| Phobius | 741 | 792 | 52 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v0727390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0727390.1, powered by CORGI.
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