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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0878960 |
| Transcript ID | Lj2g3v0878960.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356504551|ref|XP_003521059.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 513 | 513 | 0 | ||
| PANTHER | 1 | 513 | 513 | 0 | – | |
| MobiDBLite | 28 | 72 | 45 | – | – | |
| SUPERFAMILY | 71 | 213 | 143 | 1.39E-37 | ||
| Gene3D | 74 | 212 | 139 | 1.60E-43 | – | |
| TIGRFAM | 75 | 587 | 513 | 1.40E-186 | ||
| Hamap | 77 | 589 | 513 | 41.594 | ||
| CDD | 125 | 232 | 108 | 8.99E-52 | – | |
| Pfam | 126 | 201 | 76 | 1.50E-17 | ||
| Gene3D | 215 | 584 | 370 | 4.00E-113 | – | |
| SUPERFAMILY | 220 | 586 | 367 | 1.28E-106 | – | |
| Pfam | 221 | 586 | 366 | 5.50E-72 | ||
| CDD | 235 | 587 | 353 | 0 | ||
| ProSiteProfiles | 242 | 584 | 343 | 27.04 | ||
| PRINTS | 257 | 267 | 11 | 1.10E-37 | ||
| PRINTS | 273 | 289 | 17 | 1.10E-37 | ||
| PRINTS | 302 | 315 | 14 | 1.10E-37 | ||
| PRINTS | 320 | 337 | 18 | 1.10E-37 | ||
| PRINTS | 453 | 469 | 17 | 1.10E-37 | ||
| Coils | 504 | 524 | 21 | – | – | |
| MobiDBLite | 514 | 535 | 22 | – | – | |
| PANTHER | 530 | 590 | 61 | 0 | – | |
| PANTHER | 530 | 590 | 61 | 0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Lysine-tRNA ligase activity | Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Lysyl-tRNA aminoacylation | The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA. |
Expression pattern of Lj2g3v0878960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0878960.1, powered by CORGI.
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