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Lj2g3v1020040.1

Overview

Field Value
Gene ID Lj2g3v1020040
Transcript ID Lj2g3v1020040.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 40-like [Glycine max] gi|356550235|ref|XP_003543493.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315
23 146 124 1.60E-269 –
PANTHER
PTHR23315:SF127
23 146 124 1.60E-269 –
SUPERFAMILY
SSF57850
53 132 80 3.71E-17 –
ProSiteProfiles
PS51698
62 136 75 26.698
IPR003613
Gene3D
G3DSA:3.30.40.10
62 133 72 5.20E-16
IPR013083
Pfam
PF04564
64 133 70 7.00E-13
IPR003613
SMART
SM00504
66 129 64 3.50E-10
IPR003613
PANTHER
PTHR23315:SF127
166 518 353 1.60E-269 –
PANTHER
PTHR23315
166 518 353 1.60E-269 –
MobiDBLite
mobidb-lite
186 227 42 – –
Gene3D
G3DSA:1.25.10.10
228 505 278 7.30E-45
IPR011989
CDD
cd00020
230 336 107 5.30E-05 –
SUPERFAMILY
SSF48371
230 498 269 1.12E-32
IPR016024
SMART
SM00185
297 337 41 5
IPR000225
CDD
cd00020
304 415 112 1.04E-10 –
SMART
SM00185
338 378 41 5.8
IPR000225
Pfam
PF00514
338 377 40 1.00E-04
IPR000225
CDD
cd00020
384 479 96 2.69E-04 –
SMART
SM00185
418 461 44 7.1
IPR000225
MobiDBLite
mobidb-lite
524 543 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v1020040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1020040.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.