Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1034390.1

Overview

Field Value
Gene ID Lj2g3v1034390
Transcript ID Lj2g3v1034390.1
Lotus japonicus genome version MG20 v3.0
Description Os08g0414200 [Oryza sativa Japonica Group] gi|115476410|ref|NP_001061801.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 305 305 – –
PANTHER
PTHR13561:SF26
104 296 193 8.20E-33 –
PANTHER
PTHR13561
104 296 193 8.20E-33 –
SUPERFAMILY
SSF57850
159 216 58 2.70E-15 –
Gene3D
G3DSA:3.30.40.10
161 214 54 3.80E-15
IPR013083
SMART
SM00184
165 209 45 1.60E-07
IPR001841
ProSiteProfiles
PS50089
165 210 46 13.301
IPR001841
Pfam
PF00097
165 209 45 1.30E-08
IPR018957
CDD
cd00162
165 213 49 3.89E-09 –
ProSitePatterns
PS00518
181 190 10 –
IPR017907
Phobius
TRANSMEMBRANE
306 323 18 – –
Phobius
CYTOPLASMIC_DOMAIN
324 326 3 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v1034390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1034390.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.