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Lj2g3v1069240.1

Overview

Field Value
Gene ID Lj2g3v1069240
Transcript ID Lj2g3v1069240.1
Lotus japonicus genome version MG20 v3.0
Description CCP [Medicago truncatula] gi|357496653|ref|XP_003618615.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 87 87 – –
PANTHER
PTHR13139
18 266 249 5.20E-155 –
PANTHER
PTHR13139:SF47
18 266 249 5.20E-155 –
Gene3D
G3DSA:3.30.40.10
39 100 62 4.20E-11
IPR013083
SUPERFAMILY
SSF57850
40 103 64 2.54E-10 –
CDD
cd00162
44 74 31 0.00716675 –
ProSiteProfiles
PS50089
45 100 56 10.144
IPR001841
Pfam
PF13445
45 97 53 5.70E-09
IPR027370
ProSitePatterns
PS00518
64 73 10 –
IPR017907
Phobius
TRANSMEMBRANE
88 108 21 – –
Phobius
CYTOPLASMIC_DOMAIN
109 200 92 – –
TMHMM
TMhelix
201 223 23 – –
Phobius
TRANSMEMBRANE
201 225 25 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
226 230 5 – –
TMHMM
TMhelix
230 252 23 – –
Phobius
TRANSMEMBRANE
231 252 22 – –
Phobius
CYTOPLASMIC_DOMAIN
253 266 14 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj2g3v1069240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1069240.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.