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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027370
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.103s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0220209.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356544236|ref|XP_003540560.1| chr0 112677710 112678148 +
2 domain predictions
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Lj0g3v0301709.1
n.a. SymRK interaction E3 ligase [Lotus japonicus] gi|388267601|gb|AFK25801.1| chr0 156838633 156841275 +
2 domain predictions
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Lj1g3v0874380.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein translocase subunit SECA2, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470113007|ref|XP_004292719.1| chr1 11233272 11237661 +
2 domain predictions
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Lj1g3v2996620.2
n.a. CCP [Medicago truncatula] gi|357496653|ref|XP_003618615.1| chr1 34108391 34111448 +
2 domain predictions
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Lj2g3v1069240.1
n.a. CCP [Medicago truncatula] gi|357496653|ref|XP_003618615.1| chr2 17389645 17391901 +
2 domain predictions
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Lj2g3v1266120.1
n.a. RING/U-box superfamily protein [Theobroma cacao] gi|508709866|gb|EOY01763.1| chr2 20130831 20132782 -
2 domain predictions
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Lj2g3v3339680.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356499501|ref|XP_003518578.1| chr2 42793639 42797488 -
2 domain predictions
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Lj3g3v3033270.1
n.a. PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] gi|356539356|ref|XP_003538164.1| chr3 37989462 37992179 +
2 domain predictions
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Lj6g3v2171950.1
n.a. PREDICTED: protein RMD5 homolog A-like isoform X2 [Cicer arietinum] gi|502077391|ref|XP_004485638.1| chr6 25108955 25114088 +
2 domain predictions
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LotjaGi1g1v0004400.1
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 804738 813954 +
2 domain predictions
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LotjaGi1g1v0004400.2
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 806178 813954 +
2 domain predictions
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LotjaGi1g1v0508900.1
n.a. Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8CEF8|RN222_MOUSE RING finger protein 222; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0508900 LjG1.1_chr1 102804294 102806703 +
2 domain predictions
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LotjaGi1g1v0508900.2
n.a. Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8CEF8|RN222_MOUSE RING finger protein 222; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0508900 LjG1.1_chr1 102805500 102806300 +
2 domain predictions
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LotjaGi1g1v0533200.1
n.a. Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533200 LjG1.1_chr1 106061988 106064639 +
2 domain predictions
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LotjaGi1g1v0533200.2
n.a. Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533200 LjG1.1_chr1 106063557 106064357 +
2 domain predictions
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LotjaGi1g1v0741800.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT2G38920.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein; Swiss-Prot: sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like; TrEMBL-Plants: tr|A0A151TVX6|A0A151TVX6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0741800 LjG1.1_chr1 131564671 131568283 -
2 domain predictions
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LotjaGi2g1v0263600.1
n.a. RING-type E3 ubiquitin ligase; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|C6TIH4|C6TIH4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0263600 LjG1.1_chr2 73296677 73297477 +
2 domain predictions
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LotjaGi2g1v0297200.1
n.a. Ubiquitin-protein ligase, putative; TAIR: AT1G69330.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8K0W3|RN208_MOUSE RING finger protein 208; TrEMBL-Plants: tr|I1JEB9|I1JEB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0297200 LjG1.1_chr2 77206495 77208734 -
2 domain predictions
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LotjaGi3g1v0081200.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G24800.1 proteolysis 1; Swiss-Prot: sp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT1; TrEMBL-Plants: tr|A0A151SEQ5|A0A151SEQ5_CAJCA E3 ubiquitin-protein ligase PRT1; Found in the gene: LotjaGi3g1v0081200 LjG1.1_chr3 9070869 9084672 +
2 domain predictions
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LotjaGi3g1v0108600.1
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381294 13406224 +
2 domain predictions
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LotjaGi3g1v0108600.2
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|A0A1J7IRE0|A0A1J7IRE0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13385193 +
2 domain predictions
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LotjaGi3g1v0108600.3
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13405194 +
2 domain predictions
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LotjaGi3g1v0108600.4
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13405194 +
2 domain predictions
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LotjaGi3g1v0179400.1
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A; TrEMBL-Plants: tr|K0BV36|K0BV36_LOTJA SIE3; Found in the gene: LotjaGi3g1v0179400 LjG1.1_chr3 25001306 25004302 +
2 domain predictions
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LotjaGi3g1v0179400.2
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A; TrEMBL-Plants: tr|K0BV36|K0BV36_LOTJA SIE3; Found in the gene: LotjaGi3g1v0179400 LjG1.1_chr3 25002595 25003755 +
2 domain predictions
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LotjaGi3g1v0484900.1
n.a. RING finger and CHY zinc finger protein; TAIR: AT5G22920.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp|Q8VZK0|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr|I3SWI0|I3SWI0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0484900 LjG1.1_chr3 90209787 90213600 +
2 domain predictions
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LotjaGi4g1v0278600.1
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1LNN5|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600 LjG1.1_chr4 64882147 64886907 -
2 domain predictions
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LotjaGi5g1v0251200.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|I1JQL7|I1JQL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 LjG1.1_chr5 55951177 55954770 +
2 domain predictions
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LotjaGi5g1v0251200.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 LjG1.1_chr5 55951498 55953626 +
2 domain predictions
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LotjaGi6g1v0346500.1
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151S0Z4|A0A151S0Z4_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi6g1v0346500 LjG1.1_chr6 65892461 65899032 +
2 domain predictions
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LotjaGi6g1v0346500.2
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151S0Z4|A0A151S0Z4_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi6g1v0346500 LjG1.1_chr6 65896279 65897433 +
2 domain predictions
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