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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1378840 |
| Transcript ID | Lj2g3v1378840.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Cicer arietinum] gi|502093025|ref|XP_004489863.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 355 | 355 | 4.50E-217 | – | |
| ProSiteProfiles | 1 | 257 | 257 | 24.013 | ||
| CDD | 1 | 262 | 262 | 5.13E-166 | ||
| PANTHER | 1 | 355 | 355 | 4.50E-217 | – | |
| SUPERFAMILY | 2 | 249 | 248 | 4.76E-78 | – | |
| TIGRFAM | 2 | 353 | 352 | 9.80E-146 | ||
| Gene3D | 2 | 253 | 252 | 2.40E-111 | – | |
| Pfam | 46 | 252 | 207 | 9.90E-40 | ||
| PRINTS | 52 | 80 | 29 | 1.50E-55 | ||
| PRINTS | 85 | 108 | 24 | 1.50E-55 | ||
| PRINTS | 186 | 214 | 29 | 1.50E-55 | ||
| PRINTS | 230 | 243 | 14 | 1.50E-55 | ||
| SUPERFAMILY | 250 | 355 | 106 | 4.53E-29 | ||
| Gene3D | 254 | 357 | 104 | 4.80E-37 | ||
| PRINTS | 257 | 269 | 13 | 1.50E-55 | ||
| CDD | 262 | 351 | 90 | 2.38E-33 | – | |
| Pfam | 264 | 352 | 89 | 3.70E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Threonine-tRNA ligase activity | Catalysis of the reaction: ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + L-threonyl-tRNA(Thr). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Threonyl-tRNA aminoacylation | The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. The threonyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a threonine-accetping tRNA. |
Expression pattern of Lj2g3v1378840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1378840.1, powered by CORGI.
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