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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002314
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We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.588s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001799.1
n.a. PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1| chr0 500893 504848 -
2 domain predictions
4 GO terms
Lj0g3v0274769.1
n.a. PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1| chr0 142460730 142464602 +
2 domain predictions
4 GO terms
Lj0g3v0296119.1
n.a. PREDICTED: proline--tRNA ligase-like [Cicer arietinum] gi|502132994|ref|XP_004501611.1| chr0 153885500 153890210 +
2 domain predictions
4 GO terms
Lj0g3v0318599.1
n.a. PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| chr0 166385765 166390591 +
2 domain predictions
4 GO terms
Lj1g3v1514800.1
n.a. Seryl-tRNA synthetase [Medicago truncatula] gi|357465107|ref|XP_003602835.1| chr1 18000084 18004494 -
2 domain predictions
4 GO terms
Lj1g3v1514800.2
n.a. Seryl-tRNA synthetase [Medicago truncatula] gi|357465105|ref|XP_003602834.1| chr1 18000084 18004494 -
2 domain predictions
4 GO terms
Lj1g3v3328940.1
n.a. PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cicer arietinum] gi|502127199|ref|XP_004499600.1| chr1 37408733 37413097 +
2 domain predictions
4 GO terms
Lj1g3v4830240.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr1 58320838 58325597 -
2 domain predictions
4 GO terms
Lj2g3v1378840.1
n.a. PREDICTED: threonine--tRNA ligase, mitochondrial-like [Cicer arietinum] gi|502093025|ref|XP_004489863.1| chr2 21766122 21773133 -
2 domain predictions
4 GO terms
Lj2g3v1378840.2
n.a. PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| chr2 21766122 21774927 -
2 domain predictions
4 GO terms
Lj2g3v1468010.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr2 23284510 23286437 +
2 domain predictions
4 GO terms
Lj5g3v1494610.1
n.a. PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1| chr5 21638393 21651821 +
2 domain predictions
4 GO terms
Lj5g3v1494610.2
n.a. PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1| chr5 21648241 21652187 +
2 domain predictions
4 GO terms
Lj5g3v1494610.3
n.a. PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1| chr5 21648241 21651821 +
2 domain predictions
4 GO terms
LotjaGi1g1v0067400_LC.1
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A151TGM6|A0A151TGM6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0067400_LC LjG1.1_chr1 9318052 9328828 +
2 domain predictions
4 GO terms
LotjaGi1g1v0339700.1
n.a. Serine--tRNA ligase; TAIR: AT1G11870.2 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700 LjG1.1_chr1 80081035 80088101 +
2 domain predictions
4 GO terms
LotjaGi1g1v0339700.2
n.a. Serine--tRNA ligase; TAIR: AT1G11870.1 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700 LjG1.1_chr1 80081160 80085390 +
2 domain predictions
4 GO terms
LotjaGi1g1v0339700.3
n.a. Serine--tRNA ligase; TAIR: AT1G11870.1 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700 LjG1.1_chr1 80082329 80085425 +
2 domain predictions
4 GO terms
LotjaGi1g1v0551900.1
n.a. Glycine--tRNA ligase; TAIR: AT1G29880.1 glycyl-tRNA synthetase / glycine-tRNA ligase; Swiss-Prot: sp|O23627|SYGM1_ARATH Glycine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A072U6L4|A0A072U6L4_MEDTR Glycyl-tRNA synthetase/glycine-tRNA ligase; Found in the gene: LotjaGi1g1v0551900 LjG1.1_chr1 108326725 108331427 +
2 domain predictions
4 GO terms
LotjaGi1g1v0754600.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132761414 132767262 -
2 domain predictions
4 GO terms
LotjaGi1g1v0754600.2
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132762655 132766913 -
2 domain predictions
4 GO terms
LotjaGi2g1v0122700.1
n.a. Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7C4B0|V7C4B0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700 LjG1.1_chr2 45130518 45136183 +
2 domain predictions
4 GO terms
LotjaGi2g1v0318100.1
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79300976 79310558 -
2 domain predictions
4 GO terms
LotjaGi2g1v0318100.2
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302473 79310414 -
2 domain predictions
4 GO terms
LotjaGi2g1v0318100.3
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302478 79310414 -
2 domain predictions
4 GO terms
LotjaGi2g1v0330900.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330900 LjG1.1_chr2 80651732 80653697 +
2 domain predictions
4 GO terms
LotjaGi5g1v0220300.2
n.a. Serine--tRNA ligase; TAIR: AT5G27470.1 seryl-tRNA synthetase / serine-tRNA ligase; Swiss-Prot: sp|O81983|SYS_HELAN Serine--tRNA ligase; TrEMBL-Plants: tr|A0A0B2Q4B0|A0A0B2Q4B0_GLYSO Serine--tRNA ligase; Found in the gene: LotjaGi5g1v0220300 LjG1.1_chr5 52678763 52684698 +
2 domain predictions
4 GO terms
LotjaGi6g1v0009800.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800 LjG1.1_chr6 1842035 1846797 +
2 domain predictions
4 GO terms
LotjaGi6g1v0009800.2
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800 LjG1.1_chr6 1842035 1847268 +
2 domain predictions
4 GO terms
LotjaGi6g1v0022700.1
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|G7J9I7|G7J9I7_MEDTR Threonyl-tRNA synthetase/threonine-tRNA ligase, putative; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271283 4277318 -
2 domain predictions
4 GO terms
LotjaGi6g1v0022700.2
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275837 -
2 domain predictions
4 GO terms
LotjaGi6g1v0022700.3
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275839 -
2 domain predictions
4 GO terms
LotjaGi6g1v0022700.4
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275840 -
2 domain predictions
4 GO terms