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PF00587

Source: Pfam

Description

tRNA synthetase class II core domain (G, H, P, S and T)

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of

Associated Lotus transcripts 33

Transcript Name Description Predicted domains Domain count
Lj0g3v0001799.1
– PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1|
Domains
20
Lj0g3v0274769.1
– PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1|
Domains
21
Lj0g3v0296119.1
– PREDICTED: proline--tRNA ligase-like [Cicer arietinum] gi|502132994|ref|XP_004501611.1|
Domains
27
Lj0g3v0318599.1
– PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1|
Domains
16
Lj1g3v1514800.1
– Seryl-tRNA synthetase [Medicago truncatula] gi|357465107|ref|XP_003602835.1|
Domains
17
Lj1g3v1514800.2
– Seryl-tRNA synthetase [Medicago truncatula] gi|357465105|ref|XP_003602834.1|
Domains
21
Lj1g3v3328940.1
– PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cicer arietinum] gi|502127199|ref|XP_004499600.1|
Domains
32
Lj1g3v4830240.1
– PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1|
Domains
28
Lj2g3v1378840.1
– PREDICTED: threonine--tRNA ligase, mitochondrial-like [Cicer arietinum] gi|502093025|ref|XP_004489863.1|
Domains
18
Lj2g3v1378840.2
– PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1|
Domains
25
Lj2g3v1468010.1
– PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1|
Domains
26
Lj5g3v1494610.1
– PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1|
Domains
10
Lj5g3v1494610.2
– PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1|
Domains
20
Lj5g3v1494610.3
– PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1|
Domains
20
LotjaGi1g1v0067400_LC.1
– Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A151TGM6|A0A151TGM6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0067400_LC
Domains
20
LotjaGi1g1v0339700.1
– Serine--tRNA ligase; TAIR: AT1G11870.2 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700
Domains
22
LotjaGi1g1v0339700.2
– Serine--tRNA ligase; TAIR: AT1G11870.1 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700
Domains
17
LotjaGi1g1v0339700.3
– Serine--tRNA ligase; TAIR: AT1G11870.1 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700
Domains
17
LotjaGi1g1v0551900.1
– Glycine--tRNA ligase; TAIR: AT1G29880.1 glycyl-tRNA synthetase / glycine-tRNA ligase; Swiss-Prot: sp|O23627|SYGM1_ARATH Glycine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A072U6L4|A0A072U6L4_MEDTR Glycyl-tRNA synthetase/glycine-tRNA ligase; Found in the gene: LotjaGi1g1v0551900
Domains
35
LotjaGi1g1v0754600.1
– Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600
Domains
29
LotjaGi1g1v0754600.2
– Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600
Domains
29
LotjaGi2g1v0122700.1
– Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7C4B0|V7C4B0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700
Domains
33
LotjaGi2g1v0318100.1
– Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100
Domains
35
LotjaGi2g1v0318100.2
– Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100
Domains
35
LotjaGi2g1v0318100.3
– Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100
Domains
35
LotjaGi2g1v0330900.1
– Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330900
Domains
27
LotjaGi5g1v0220300.2
– Serine--tRNA ligase; TAIR: AT5G27470.1 seryl-tRNA synthetase / serine-tRNA ligase; Swiss-Prot: sp|O81983|SYS_HELAN Serine--tRNA ligase; TrEMBL-Plants: tr|A0A0B2Q4B0|A0A0B2Q4B0_GLYSO Serine--tRNA ligase; Found in the gene: LotjaGi5g1v0220300
Domains
21
LotjaGi6g1v0009800.1
– Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800
Domains
29
LotjaGi6g1v0009800.2
– Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800
Domains
29
LotjaGi6g1v0022700.1
– Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|G7J9I7|G7J9I7_MEDTR Threonyl-tRNA synthetase/threonine-tRNA ligase, putative; Found in the gene: LotjaGi6g1v0022700
Domains
27
LotjaGi6g1v0022700.2
– Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700
Domains
27
LotjaGi6g1v0022700.3
– Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700
Domains
27
LotjaGi6g1v0022700.4
– Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700
Domains
27

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00860 CDD 1 3.03