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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004154
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 38 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.367s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001779.1
n.a. PREDICTED: threonyl-tRNA synthetase-like [Glycine max] gi|356572524|ref|XP_003554418.1| chr0 499113 500375 -
4 domain predictions
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Lj0g3v0261819.1
n.a. PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Cicer arietinum] gi|502127749|ref|XP_004499820.1| chr0 135678919 135684155 -
2 domain predictions
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Lj0g3v0274789.1
n.a. PREDICTED: threonyl-tRNA synthetase-like [Glycine max] gi|356572524|ref|XP_003554418.1| chr0 142465120 142466382 +
4 domain predictions
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Lj0g3v0296119.1
n.a. PREDICTED: proline--tRNA ligase-like [Cicer arietinum] gi|502132994|ref|XP_004501611.1| chr0 153885500 153890210 +
4 domain predictions
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Lj0g3v0318599.1
n.a. PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| chr0 166385765 166390591 +
3 domain predictions
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Lj1g3v3102650.1
n.a. Ribosome biogenesis protein BRX1-like protein [Medicago truncatula] gi|357506041|ref|XP_003623309.1| chr1 35194883 35198826 -
2 domain predictions
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Lj1g3v3102650.2
n.a. PREDICTED: ribosome biogenesis protein BRX1 homolog [Cicer arietinum] gi|502125035|ref|XP_004498770.1| chr1 35194883 35198826 -
2 domain predictions
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Lj1g3v3328940.1
n.a. PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cicer arietinum] gi|502127199|ref|XP_004499600.1| chr1 37408733 37413097 +
4 domain predictions
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Lj1g3v4591200.1
n.a. PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi|356505252|ref|XP_003521406.1| chr1 54981260 54992780 +
4 domain predictions
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Lj1g3v4830240.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr1 58320838 58325597 -
4 domain predictions
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Lj2g3v1378840.1
n.a. PREDICTED: threonine--tRNA ligase, mitochondrial-like [Cicer arietinum] gi|502093025|ref|XP_004489863.1| chr2 21766122 21773133 -
4 domain predictions
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Lj2g3v1468010.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr2 23284510 23286437 +
4 domain predictions
 –
Lj3g3v2531170.1
n.a. Ribosome production factor [Medicago truncatula] gi|358346575|ref|XP_003637342.1| chr3 31060667 31065187 -
2 domain predictions
 –
Lj3g3v2531170.2
n.a. Ribosome production factor [Medicago truncatula] gi|358346575|ref|XP_003637342.1| chr3 31060667 31065046 -
2 domain predictions
 –
Lj3g3v3084430.1
n.a. PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cucumis sativus] gi|449470277|ref|XP_004152844.1| chr3 38548115 38548414 +
4 domain predictions
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Lj4g3v3112980.1
n.a. PREDICTED: histidine--tRNA ligase-like [Cicer arietinum] gi|502122299|ref|XP_004497677.1| chr4 41487075 41493855 -
4 domain predictions
 –
Lj5g3v0656970.1
n.a. PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi|356505252|ref|XP_003521406.1| chr5 8976775 8984120 -
4 domain predictions
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LotjaGi1g1v0067400_LC.1
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A151TGM6|A0A151TGM6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0067400_LC LjG1.1_chr1 9318052 9328828 +
2 domain predictions
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LotjaGi1g1v0551900.1
n.a. Glycine--tRNA ligase; TAIR: AT1G29880.1 glycyl-tRNA synthetase / glycine-tRNA ligase; Swiss-Prot: sp|O23627|SYGM1_ARATH Glycine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A072U6L4|A0A072U6L4_MEDTR Glycyl-tRNA synthetase/glycine-tRNA ligase; Found in the gene: LotjaGi1g1v0551900 LjG1.1_chr1 108326725 108331427 +
2 domain predictions
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LotjaGi1g1v0688700.1
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1JPP8|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125607215 125627467 -
2 domain predictions
 –
LotjaGi1g1v0688700.2
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KFU0|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125615819 125627346 -
2 domain predictions
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LotjaGi1g1v0688700.3
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1JPP8|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125615819 125627346 -
2 domain predictions
 –
LotjaGi1g1v0688700.4
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1JPP8|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125615819 125627346 -
2 domain predictions
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LotjaGi1g1v0754600.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132761414 132767262 -
2 domain predictions
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LotjaGi1g1v0754600.2
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132762655 132766913 -
2 domain predictions
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LotjaGi2g1v0122700.1
n.a. Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7C4B0|V7C4B0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700 LjG1.1_chr2 45130518 45136183 +
2 domain predictions
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LotjaGi2g1v0122700.2
n.a. Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1L332|I1L332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700 LjG1.1_chr2 45130990 45135791 +
2 domain predictions
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LotjaGi2g1v0318100.1
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79300976 79310558 -
2 domain predictions
 –
LotjaGi2g1v0318100.2
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302473 79310414 -
2 domain predictions
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LotjaGi2g1v0318100.3
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302478 79310414 -
2 domain predictions
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LotjaGi2g1v0330900.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330900 LjG1.1_chr2 80651732 80653697 +
2 domain predictions
 –
LotjaGi4g1v0456100.1
n.a. Histidine--tRNA ligase; TAIR: AT3G02760.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|F4IYF8|SYHC_ARATH Histidine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A072VJI1|A0A072VJI1_MEDTR Histidyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0456100 LjG1.1_chr4 82758103 82765311 -
2 domain predictions
 –
LotjaGi6g1v0009800.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800 LjG1.1_chr6 1842035 1846797 +
2 domain predictions
 –
LotjaGi6g1v0009800.2
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800 LjG1.1_chr6 1842035 1847268 +
2 domain predictions
 –
LotjaGi6g1v0022700.1
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|G7J9I7|G7J9I7_MEDTR Threonyl-tRNA synthetase/threonine-tRNA ligase, putative; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271283 4277318 -
2 domain predictions
 –
LotjaGi6g1v0022700.2
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275837 -
2 domain predictions
 –
LotjaGi6g1v0022700.3
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275839 -
2 domain predictions
 –
LotjaGi6g1v0022700.4
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275840 -
2 domain predictions
 –