Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1499280.1

Overview

Field Value
Gene ID Lj2g3v1499280
Transcript ID Lj2g3v1499280.1
Lotus japonicus genome version MG20 v3.0
Description Kinase R-like protein [Medicago truncatula] gi|357438749|ref|XP_003589651.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 225 225 – –
PANTHER
PTHR27009:SF18
23 510 488 7.70E-259 –
PANTHER
PTHR27009
23 510 488 7.70E-259 –
Pfam
PF13947
24 91 68 4.80E-09
IPR025287
Gene3D
G3DSA:2.60.120.200
210 301 92 5.70E-08
IPR013320
Phobius
TRANSMEMBRANE
226 250 25 – –
TMHMM
TMhelix
227 249 23 – –
Phobius
CYTOPLASMIC_DOMAIN
251 534 284 – –
SUPERFAMILY
SSF56112
272 510 239 6.34E-68
IPR011009
ProSiteProfiles
PS50011
288 534 247 36.061
IPR000719
SMART
SM00220
288 524 237 1.90E-20
IPR000719
Pfam
PF00069
291 501 211 1.20E-46
IPR000719
ProSitePatterns
PS00107
294 316 23 –
IPR017441
Gene3D
G3DSA:3.30.200.20
302 349 48 1.30E-20 –
Gene3D
G3DSA:1.10.510.10
350 498 149 5.50E-41 –
ProSitePatterns
PS00108
409 421 13 –
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of
GO:0030247
Molecular function Polysaccharide binding Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj2g3v1499280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1499280.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.