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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1575320 |
| Transcript ID | Lj2g3v1575320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like isoform X1 [Cicer arietinum] gi|502126430|ref|XP_004499305.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 378 | 378 | 5.50E-236 | – | |
| PANTHER | 1 | 378 | 378 | 5.50E-236 | – | |
| ProSiteProfiles | 10 | 44 | 35 | 7.355 | ||
| ProSiteProfiles | 45 | 82 | 38 | 6.675 | ||
| Gene3D | 62 | 79 | 18 | 4.10E-06 | ||
| Gene3D | 160 | 214 | 55 | 4.10E-06 | ||
| ProSiteProfiles | 162 | 196 | 35 | 6.478 | ||
| ProSiteProfiles | 197 | 227 | 31 | 5.788 | ||
| Pfam | 206 | 225 | 20 | 0.17 | ||
| ProSiteProfiles | 232 | 266 | 35 | 8.89 | ||
| Gene3D | 270 | 327 | 58 | 4.10E-06 | ||
| ProSiteProfiles | 301 | 331 | 31 | 8.616 | ||
| TIGRFAM | 304 | 328 | 25 | 1.40E-04 | ||
| Pfam | 304 | 330 | 27 | 0.0018 | ||
| ProSiteProfiles | 337 | 371 | 35 | 7.673 | ||
| Pfam | 340 | 365 | 26 | 0.27 | ||
| Gene3D | 374 | 491 | 118 | 6.60E-29 | ||
| SUPERFAMILY | 394 | 582 | 189 | 1.45E-33 | ||
| Pfam | 403 | 568 | 166 | 1.00E-40 | ||
| Gene3D | 492 | 583 | 92 | 4.70E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1575320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1575320.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.