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Lj2g3v1645560.1

Overview

Field Value
Gene ID Lj2g3v1645560
Transcript ID Lj2g3v1645560.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nucleolar GTP-binding protein 1-like [Glycine max] gi|356538952|ref|XP_003537964.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF038919
1 671 671 5.50E-265
IPR024926
PANTHER
PTHR11702
1 363 363 4.40E-301 –
PANTHER
PTHR11702:SF4
1 363 363 4.40E-301 –
SUPERFAMILY
SSF52540
48 310 263 2.20E-38
IPR027417
Gene3D
G3DSA:3.40.50.300
165 375 211 8.40E-39
IPR027417
ProSiteProfiles
PS51710
169 355 187 39.197
IPR031167
CDD
cd01897
169 355 187 1.47E-95 –
PRINTS
PR00326
171 191 21 2.50E-08
IPR006073
PRINTS
PR00326
192 210 19 2.50E-08
IPR006073
PRINTS
PR00326
219 234 16 2.50E-08
IPR006073
Pfam
PF06858
236 292 57 1.30E-24
IPR010674
Coils
Coil
394 422 29 – –
Pfam
PF08155
410 463 54 2.30E-27
IPR012973
Coils
Coil
464 484 21 – –
PANTHER
PTHR11702:SF4
491 670 180 4.40E-301 –
PANTHER
PTHR11702
491 670 180 4.40E-301 –
MobiDBLite
mobidb-lite
562 671 110 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0005730
Cellular component Nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
Subterm of
Part of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj2g3v1645560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1645560.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.