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Lj2g3v1729020.1

Overview

Field Value
Gene ID Lj2g3v1729020
Transcript ID Lj2g3v1729020.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable mitochondrial chaperone BCS1-B-like [Glycine max] gi|356538238|ref|XP_003537611.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23070
1 459 459 5.00E-268 –
Phobius
CYTOPLASMIC_DOMAIN
1 20 20 – –
PANTHER
PTHR23070:SF12
1 459 459 5.00E-268 –
Phobius
TRANSMEMBRANE
21 39 19 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
40 465 426 – –
Pfam
PF14363
43 137 95 3.30E-17
IPR025753
SUPERFAMILY
SSF52540
156 305 150 1.12E-47
IPR027417
Gene3D
G3DSA:3.40.50.300
226 389 164 1.20E-40
IPR027417
CDD
cd00009
233 391 159 1.50E-09 –
SMART
SM00382
244 394 151 1.40E-05
IPR003593
Pfam
PF00004
249 390 142 5.40E-16
IPR003959
SUPERFAMILY
SSF52540
342 439 98 1.12E-47
IPR027417
ProSitePatterns
PS00674
362 380 19 –
IPR003960

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v1729020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1729020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.