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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2412460 |
| Transcript ID | Lj2g3v2412460.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: U-box domain-containing protein 4-like [Glycine max] gi|356499010|ref|XP_003518337.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 59 | 79 | 21 | – | – | |
| PANTHER | 59 | 304 | 246 | 2.20E-253 | – | |
| PANTHER | 59 | 304 | 246 | 2.20E-253 | – | |
| Coils | 163 | 193 | 31 | – | – | |
| SUPERFAMILY | 210 | 297 | 88 | 2.27E-27 | – | |
| Gene3D | 219 | 291 | 73 | 9.90E-29 | ||
| ProSiteProfiles | 219 | 293 | 75 | 39.25 | ||
| Pfam | 220 | 290 | 71 | 2.90E-20 | ||
| SMART | 223 | 286 | 64 | 2.20E-31 | ||
| MobiDBLite | 352 | 472 | 121 | – | – | |
| Gene3D | 390 | 391 | 2 | 2.90E-76 | ||
| PANTHER | 417 | 783 | 367 | 2.20E-253 | – | |
| PANTHER | 417 | 783 | 367 | 2.20E-253 | – | |
| Coils | 490 | 510 | 21 | – | – | |
| Gene3D | 494 | 772 | 279 | 2.90E-76 | ||
| SUPERFAMILY | 499 | 772 | 274 | 3.52E-46 | ||
| SMART | 529 | 569 | 41 | 7.50E-04 | ||
| Pfam | 531 | 568 | 38 | 1.10E-07 | ||
| CDD | 535 | 650 | 116 | 2.34E-16 | – | |
| ProSiteProfiles | 540 | 582 | 43 | 10.412 | ||
| SMART | 570 | 610 | 41 | 0.0098 | ||
| Pfam | 572 | 609 | 38 | 1.00E-05 | ||
| ProSiteProfiles | 581 | 623 | 43 | 9.082 | ||
| SMART | 611 | 651 | 41 | 0.0067 | ||
| Pfam | 612 | 650 | 39 | 3.20E-05 | ||
| CDD | 618 | 732 | 115 | 1.30E-11 | – | |
| ProSiteProfiles | 622 | 664 | 43 | 11.147 | ||
| SMART | 652 | 691 | 40 | 6.70E-04 | ||
| Pfam | 653 | 690 | 38 | 1.10E-04 | ||
| ProSiteProfiles | 663 | 704 | 42 | 10.832 | ||
| SMART | 692 | 732 | 41 | 26 | ||
| CDD | 699 | 769 | 71 | 2.36E-06 | – | |
| SMART | 734 | 774 | 41 | 89 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of Lj2g3v2412460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2412460.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.