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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2541790 |
| Transcript ID | Lj2g3v2541790.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: potassium channel SKOR-like [Glycine max] gi|356552003|ref|XP_003544361.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 107 | 107 | – | – | |
| MobiDBLite | 1 | 49 | 49 | – | – | |
| PANTHER | 14 | 23 | 10 | 0 | – | |
| PANTHER | 14 | 23 | 10 | 0 | – | |
| PANTHER | 47 | 852 | 806 | 0 | – | |
| PANTHER | 47 | 852 | 806 | 0 | – | |
| SUPERFAMILY | 100 | 352 | 253 | 4.32E-37 | – | |
| Pfam | 107 | 352 | 246 | 4.30E-24 | ||
| Phobius | 108 | 126 | 19 | – | – | |
| Gene3D | 109 | 351 | 243 | 3.10E-33 | – | |
| TMHMM | 112 | 134 | 23 | – | – | |
| Phobius | 127 | 137 | 11 | – | – | |
| Phobius | 138 | 159 | 22 | – | – | |
| TMHMM | 138 | 160 | 23 | – | – | |
| PRINTS | 142 | 152 | 11 | 1.10E-07 | ||
| Phobius | 160 | 300 | 141 | – | – | |
| TMHMM | 242 | 264 | 23 | – | – | |
| PRINTS | 251 | 261 | 11 | 1.10E-07 | ||
| PRINTS | 299 | 316 | 18 | 1.10E-07 | ||
| Phobius | 301 | 321 | 21 | – | – | |
| TMHMM | 301 | 323 | 23 | – | – | |
| Phobius | 322 | 326 | 5 | – | – | |
| Phobius | 327 | 352 | 26 | – | – | |
| TMHMM | 330 | 352 | 23 | – | – | |
| PRINTS | 343 | 352 | 10 | 1.10E-07 | ||
| Phobius | 353 | 853 | 501 | – | – | |
| SUPERFAMILY | 355 | 544 | 190 | 8.77E-39 | ||
| Gene3D | 355 | 410 | 56 | 4.50E-05 | – | |
| Gene3D | 411 | 541 | 131 | 1.00E-22 | ||
| SMART | 427 | 545 | 119 | 2.80E-20 | ||
| CDD | 427 | 533 | 107 | 1.44E-26 | – | |
| ProSiteProfiles | 427 | 530 | 104 | 21.195 | ||
| Pfam | 447 | 531 | 85 | 2.70E-17 | ||
| ProSiteProfiles | 575 | 753 | 179 | 43.29 | ||
| SUPERFAMILY | 577 | 755 | 179 | 6.74E-46 | ||
| Gene3D | 578 | 757 | 180 | 4.80E-48 | ||
| Pfam | 578 | 666 | 89 | 5.90E-11 | ||
| CDD | 598 | 753 | 156 | 1.58E-34 | – | |
| SMART | 603 | 632 | 30 | 1.40E-04 | ||
| ProSiteProfiles | 603 | 635 | 33 | 12.583 | ||
| SMART | 636 | 665 | 30 | 0.0049 | ||
| ProSiteProfiles | 636 | 668 | 33 | 11.354 | ||
| SMART | 667 | 696 | 30 | 280 | ||
| ProSiteProfiles | 667 | 699 | 33 | 8.736 | ||
| Pfam | 673 | 754 | 82 | 1.70E-09 | ||
| ProSiteProfiles | 700 | 732 | 33 | 12.209 | ||
| SMART | 700 | 729 | 30 | 0.0014 | ||
| SMART | 733 | 763 | 31 | 500 | ||
| ProSiteProfiles | 779 | 853 | 75 | 24.583 | ||
| Pfam | 780 | 848 | 69 | 4.90E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v2541790.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2541790.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.