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Lj2g3v2794440.1

Overview

Field Value
Gene ID Lj2g3v2794440
Transcript ID Lj2g3v2794440.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 13-like [Glycine max] gi|356499213|ref|XP_003518436.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315:SF132
1 680 680 0 –
PANTHER
PTHR23315
1 680 680 0 –
SUPERFAMILY
SSF57850
281 361 81 3.21E-31 –
ProSiteProfiles
PS51698
284 358 75 39.153
IPR003613
Pfam
PF04564
285 355 71 9.90E-22
IPR003613
Gene3D
G3DSA:3.30.40.10
286 335 50 3.80E-17
IPR013083
SMART
SM00504
288 351 64 2.80E-32
IPR003613
CDD
cd00162
291 327 37 0.00120787 –
Gene3D
G3DSA:1.25.10.10
336 680 345 6.90E-50
IPR011989
SUPERFAMILY
SSF48371
398 676 279 1.19E-40
IPR016024
CDD
cd00020
399 504 106 1.32E-11 –
SMART
SM00185
427 467 41 9.30E-04
IPR000225
Pfam
PF00514
430 466 37 8.40E-09
IPR000225
ProSiteProfiles
PS50176
438 480 43 11.672
IPR000225
SMART
SM00185
513 551 39 16
IPR000225
ProSiteProfiles
PS50176
522 564 43 9.432
IPR000225
CDD
cd00020
523 633 111 1.22E-08 –
SMART
SM00185
552 592 41 5.5
IPR000225
Pfam
PF00514
553 588 36 2.30E-04
IPR000225
SMART
SM00185
593 634 42 68
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj2g3v2794440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2794440.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.