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Lj2g3v2827810.1

Overview

Field Value
Gene ID Lj2g3v2827810
Transcript ID Lj2g3v2827810.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like isoform 1 [Glycine max] gi|356540003|ref|XP_003538481.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
12 232 221 9.50E-69
IPR027417
PANTHER
PTHR24031:SF2
13 232 220 4.10E-282 –
PANTHER
PTHR24031
13 232 220 4.10E-282 –
ProSiteProfiles
PS51195
16 44 29 8.802
IPR014014
CDD
cd00268
16 226 211 1.21E-80 –
SMART
SM00487
35 241 207 1.60E-47
IPR014001
Pfam
PF00270
40 214 175 3.60E-43
IPR011545
ProSiteProfiles
PS51192
47 225 179 28.629
IPR014001
SUPERFAMILY
SSF52540
91 395 305 3.85E-58
IPR027417
ProSitePatterns
PS00039
171 179 9 –
IPR000629
Gene3D
G3DSA:3.40.50.300
236 397 162 2.00E-35
IPR027417
PANTHER
PTHR24031
248 529 282 4.10E-282 –
PANTHER
PTHR24031:SF2
248 529 282 4.10E-282 –
CDD
cd00079
262 384 123 1.38E-26 –
Pfam
PF00271
264 376 113 8.20E-22
IPR001650
ProSiteProfiles
PS51194
267 423 157 17.724
IPR001650
SMART
SM00490
295 376 82 2.70E-24
IPR001650
SMART
SM01178
414 477 64 6.40E-25
IPR025313
Pfam
PF13959
417 473 57 3.60E-19
IPR025313
MobiDBLite
mobidb-lite
502 539 38 – –
Coils
Coil
504 524 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj2g3v2827810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2827810.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.