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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3072950 |
| Transcript ID | Lj2g3v3072950.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine max] gi|356499332|ref|XP_003518495.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 4 | 83 | 80 | 1.80E-07 | ||
| PANTHER | 8 | 388 | 381 | 0 | – | |
| PANTHER | 8 | 388 | 381 | 0 | – | |
| ProSiteProfiles | 21 | 84 | 64 | 13.928 | ||
| Pfam | 23 | 82 | 60 | 5.10E-10 | ||
| Gene3D | 24 | 82 | 59 | 7.90E-17 | ||
| SUPERFAMILY | 25 | 82 | 58 | 4.32E-11 | ||
| SMART | 179 | 372 | 194 | 1.80E-25 | ||
| Gene3D | 180 | 346 | 167 | 1.80E-41 | ||
| SUPERFAMILY | 189 | 348 | 160 | 3.35E-46 | ||
| ProSiteProfiles | 191 | 363 | 173 | 19.456 | ||
| Pfam | 193 | 346 | 154 | 2.10E-09 | ||
| CDD | 198 | 345 | 148 | 3.27E-23 | – | |
| SUPERFAMILY | 416 | 508 | 93 | 4.97E-10 | ||
| Gene3D | 418 | 531 | 114 | 3.20E-10 | ||
| ProSiteProfiles | 447 | 500 | 54 | 12.381 | ||
| CDD | 448 | 533 | 86 | 7.56E-08 | – | |
| SUPERFAMILY | 511 | 677 | 167 | 3.35E-46 | ||
| PANTHER | 523 | 988 | 466 | 0 | – | |
| PANTHER | 523 | 988 | 466 | 0 | – | |
| ProSiteProfiles | 533 | 707 | 175 | 13.755 | ||
| CDD | 534 | 674 | 141 | 6.04E-07 | – | |
| Gene3D | 534 | 681 | 148 | 5.30E-10 | ||
| Pfam | 535 | 666 | 132 | 6.80E-12 | ||
| SMART | 562 | 667 | 106 | 8.70E-13 | ||
| SMART | 730 | 825 | 96 | 3.00E-16 | ||
| Pfam | 731 | 810 | 80 | 5.00E-15 | ||
| Pfam | 862 | 982 | 121 | 1.30E-09 | ||
| MobiDBLite | 987 | 1030 | 44 | – | – | |
| PANTHER | 1032 | 1156 | 125 | 0 | – | |
| PANTHER | 1032 | 1156 | 125 | 0 | – | |
| MobiDBLite | 1153 | 1173 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj2g3v3072950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3072950.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.