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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3337600 |
| Transcript ID | Lj2g3v3337600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] gi|359485813|ref|XP_003633340.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 478 | 478 | 1.80E-296 | – | |
| ProSiteProfiles | 1 | 15 | 15 | 5 | – | |
| Pfam | 4 | 52 | 49 | 6.00E-09 | ||
| ProSiteProfiles | 5 | 39 | 35 | 10.172 | ||
| TIGRFAM | 7 | 40 | 34 | 2.20E-06 | ||
| Gene3D | 9 | 36 | 28 | 6.50E-08 | ||
| ProSiteProfiles | 40 | 74 | 35 | 6.138 | ||
| Gene3D | 73 | 215 | 143 | 6.50E-08 | ||
| ProSiteProfiles | 75 | 105 | 31 | 8.046 | ||
| TIGRFAM | 80 | 108 | 29 | 9.50E-05 | ||
| SUPERFAMILY | 84 | 196 | 113 | 4.55E-05 | ||
| Pfam | 104 | 133 | 30 | 1.70E-11 | ||
| ProSiteProfiles | 106 | 140 | 35 | 12.299 | ||
| TIGRFAM | 108 | 136 | 29 | 6.70E-09 | ||
| Pfam | 136 | 164 | 29 | 2.50E-07 | ||
| TIGRFAM | 139 | 167 | 29 | 3.70E-07 | ||
| ProSiteProfiles | 141 | 167 | 27 | 7.728 | ||
| ProSiteProfiles | 168 | 198 | 31 | 10.194 | ||
| Pfam | 170 | 199 | 30 | 3.40E-07 | ||
| TIGRFAM | 170 | 198 | 29 | 2.00E-06 | ||
| ProSiteProfiles | 199 | 233 | 35 | 12.014 | ||
| Pfam | 201 | 231 | 31 | 1.50E-06 | ||
| TIGRFAM | 201 | 234 | 34 | 1.60E-05 | ||
| Gene3D | 216 | 303 | 88 | 3.10E-05 | ||
| ProSiteProfiles | 269 | 299 | 31 | 6.993 | ||
| Pfam | 274 | 295 | 22 | 0.11 | ||
| ProSiteProfiles | 300 | 334 | 35 | 10.084 | ||
| Pfam | 303 | 331 | 29 | 5.10E-05 | ||
| ProSiteProfiles | 335 | 365 | 31 | 6.873 | ||
| Gene3D | 336 | 366 | 31 | 3.10E-05 | ||
| Pfam | 338 | 364 | 27 | 0.073 | ||
| ProSiteProfiles | 371 | 405 | 35 | 7.739 | ||
| Pfam | 374 | 399 | 26 | 0.24 | ||
| Gene3D | 401 | 456 | 56 | 3.10E-05 | ||
| ProSiteProfiles | 437 | 471 | 35 | 8.046 | ||
| Pfam | 440 | 469 | 30 | 0.025 | ||
| Pfam | 474 | 598 | 125 | 2.90E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v3337600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3337600.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.