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Lj3g3v0478120.1

Overview

Field Value
Gene ID Lj3g3v0478120
Transcript ID Lj3g3v0478120.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum] gi|502157974|ref|XP_004510977.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 40 40 – –
PANTHER
PTHR27000
25 400 376 3.50E-170 –
PANTHER
PTHR27000:SF151
25 400 376 3.50E-170 –
Phobius
TRANSMEMBRANE
41 60 20 – –
TMHMM
TMhelix
41 60 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
61 404 344 – –
Gene3D
G3DSA:3.80.10.10
62 105 44 4.40E-70
IPR032675
SUPERFAMILY
SSF52058
62 105 44 1.93E-61
IPR032675
Pfam
PF08263
65 104 40 2.40E-05
IPR013210
Gene3D
G3DSA:3.80.10.10
139 402 264 4.40E-70
IPR032675
SUPERFAMILY
SSF52058
139 402 264 1.93E-61
IPR032675
SMART
SM00369
167 191 25 5.3
IPR003591
Pfam
PF13855
168 228 61 3.40E-10
IPR001611
SMART
SM00369
215 238 24 23
IPR003591
PRINTS
PR00019
218 231 14 8.30E-05 –
PRINTS
PR00019
263 276 14 8.30E-05 –
SMART
SM00369
263 287 25 140
IPR003591

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v0478120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0478120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.