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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0937780 |
| Transcript ID | Lj3g3v0937780.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | AAA ATPase; ABC transporter, transmembrane region, type 1 [Medicago truncatula] gi|124360187|gb|ABN08200.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 333 | 333 | 1.70E-296 | – | |
| ProSiteProfiles | 1 | 213 | 213 | 17.141 | ||
| PANTHER | 1 | 333 | 333 | 1.70E-296 | – | |
| Phobius | 1 | 34 | 34 | – | – | |
| Pfam | 2 | 178 | 177 | 6.90E-42 | ||
| SUPERFAMILY | 4 | 224 | 221 | 1.96E-16 | ||
| Gene3D | 7 | 224 | 218 | 9.40E-07 | – | |
| Phobius | 35 | 54 | 20 | – | – | |
| Phobius | 55 | 65 | 11 | – | – | |
| Phobius | 66 | 88 | 23 | – | – | |
| TMHMM | 66 | 88 | 23 | – | – | |
| Phobius | 89 | 568 | 480 | – | – | |
| SUPERFAMILY | 265 | 405 | 141 | 8.04E-32 | ||
| Gene3D | 269 | 332 | 64 | 5.50E-35 | ||
| ProSiteProfiles | 271 | 568 | 298 | 14.706 | ||
| CDD | 271 | 545 | 275 | 2.50E-63 | – | |
| Pfam | 288 | 504 | 217 | 1.10E-18 | ||
| SMART | 296 | 555 | 260 | 6.90E-08 | ||
| PANTHER | 380 | 414 | 35 | 1.70E-296 | – | |
| PANTHER | 380 | 414 | 35 | 1.70E-296 | – | |
| Gene3D | 383 | 405 | 23 | 5.50E-35 | ||
| Gene3D | 437 | 539 | 103 | 5.50E-35 | ||
| PANTHER | 438 | 560 | 123 | 1.70E-296 | – | |
| PANTHER | 438 | 560 | 123 | 1.70E-296 | – | |
| SUPERFAMILY | 453 | 537 | 85 | 8.04E-32 | ||
| ProSitePatterns | 476 | 490 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v0937780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0937780.1, powered by CORGI.
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