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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0988820 |
| Transcript ID | Lj3g3v0988820.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: translation initiation factor IF-2, chloroplastic-like [Glycine max] gi|356525823|ref|XP_003531521.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 7 | 988 | 982 | 15.57 | ||
| MobiDBLite | 78 | 136 | 59 | – | – | |
| MobiDBLite | 150 | 200 | 51 | – | – | |
| MobiDBLite | 214 | 289 | 76 | – | – | |
| MobiDBLite | 305 | 341 | 37 | – | – | |
| TIGRFAM | 401 | 990 | 590 | 4.70E-211 | ||
| PANTHER | 457 | 1005 | 549 | 0 | – | |
| PANTHER | 457 | 1005 | 549 | 0 | – | |
| SUPERFAMILY | 474 | 655 | 182 | 4.53E-49 | ||
| Gene3D | 476 | 643 | 168 | 5.40E-46 | ||
| ProSiteProfiles | 479 | 652 | 174 | 48.245 | ||
| TIGRFAM | 481 | 642 | 162 | 2.80E-32 | ||
| CDD | 482 | 648 | 167 | 1.90E-93 | – | |
| PRINTS | 483 | 496 | 14 | 3.10E-09 | ||
| Pfam | 484 | 644 | 161 | 9.50E-32 | – | |
| PRINTS | 535 | 545 | 11 | 3.10E-09 | ||
| PRINTS | 551 | 562 | 12 | 3.10E-09 | ||
| PRINTS | 587 | 596 | 10 | 3.10E-09 | ||
| Gene3D | 654 | 746 | 93 | 7.30E-20 | – | |
| SUPERFAMILY | 655 | 739 | 85 | 1.10E-24 | ||
| CDD | 659 | 753 | 95 | 5.41E-37 | – | |
| Coils | 738 | 758 | 21 | – | – | |
| SUPERFAMILY | 786 | 898 | 113 | 6.93E-27 | ||
| Pfam | 789 | 880 | 92 | 4.30E-28 | ||
| Gene3D | 791 | 869 | 79 | 1.50E-16 | ||
| SUPERFAMILY | 895 | 988 | 94 | 1.39E-24 | ||
| Gene3D | 896 | 989 | 94 | 2.50E-29 | – | |
| CDD | 898 | 980 | 83 | 1.21E-30 | – | |
| ProSitePatterns | 941 | 963 | 23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of Lj3g3v0988820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0988820.1, powered by CORGI.
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