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Lj3g3v1114710.1

Overview

Field Value
Gene ID Lj3g3v1114710
Transcript ID Lj3g3v1114710.1
Lotus japonicus genome version MG20 v3.0
Description acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Arabidopsis thaliana] gi|334184527|ref|NP_180365.6|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
36 65 30 – –
MobiDBLite
mobidb-lite
79 101 23 – –
PANTHER
PTHR24098
274 669 396 8.40E-275 –
PANTHER
PTHR24098:SF5
274 669 396 8.40E-275 –
MobiDBLite
mobidb-lite
457 497 41 – –
Pfam
PF16135
523 593 71 3.70E-18
IPR032308
SUPERFAMILY
SSF57903
615 666 52 4.11E-14
IPR011011
Gene3D
G3DSA:3.30.40.10
616 663 48 5.10E-16
IPR013083
ProSiteProfiles
PS50016
619 664 46 10.024
IPR019787
SMART
SM00249
621 662 42 1.90E-10
IPR001965
CDD
cd15539
621 661 41 4.21E-19 –
ProSitePatterns
PS01359
622 661 40 –
IPR019786
SUPERFAMILY
SSF57903
693 749 57 2.88E-06
IPR011011
Gene3D
G3DSA:3.30.40.10
693 752 60 2.50E-07
IPR013083
SMART
SM00249
696 751 56 1.7
IPR001965
PANTHER
PTHR24098:SF5
696 962 267 8.40E-275 –
PANTHER
PTHR24098
696 962 267 8.40E-275 –
SUPERFAMILY
SSF55729
847 950 104 2.66E-07
IPR016181
Gene3D
G3DSA:3.40.630.30
855 950 96 1.80E-06
IPR016181

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj3g3v1114710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1114710.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.