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Lj3g3v1421810.1

Overview

Field Value
Gene ID Lj3g3v1421810
Transcript ID Lj3g3v1421810.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 16-like [Cicer arietinum] gi|502146392|ref|XP_004506434.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315
1 687 687 0 –
PANTHER
PTHR23315:SF63
1 687 687 0 –
Coils
Coil
219 239 21 – –
SUPERFAMILY
SSF57850
269 352 84 2.25E-28 –
Gene3D
G3DSA:3.30.40.10
278 334 57 7.80E-31
IPR013083
ProSiteProfiles
PS51698
278 352 75 41.638
IPR003613
Pfam
PF04564
279 350 72 7.50E-19
IPR003613
SMART
SM00504
282 345 64 1.30E-30
IPR003613
Gene3D
G3DSA:1.25.10.10
335 655 321 1.70E-34
IPR011989
SUPERFAMILY
SSF48371
381 655 275 6.44E-25
IPR016024
CDD
cd00020
382 492 111 2.13E-05 –
SMART
SM00185
408 450 43 4.10E-04
IPR000225
Pfam
PF00514
409 449 41 3.20E-06
IPR000225
ProSiteProfiles
PS50176
419 463 45 13.177
IPR000225
SMART
SM00185
495 535 41 190
IPR000225
SMART
SM00185
572 613 42 480
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v1421810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1421810.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.