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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1918710 |
| Transcript ID | Lj3g3v1918710.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 588 | 588 | – | – | |
| ProSiteProfiles | 41 | 75 | 35 | 6.303 | ||
| PANTHER | 49 | 426 | 378 | 3.60E-129 | – | |
| PANTHER | 49 | 426 | 378 | 3.60E-129 | – | |
| Pfam | 52 | 73 | 22 | 0.075 | ||
| ProSiteProfiles | 76 | 110 | 35 | 11.246 | ||
| TIGRFAM | 79 | 112 | 34 | 1.30E-06 | ||
| Pfam | 79 | 124 | 46 | 4.40E-11 | ||
| SUPERFAMILY | 87 | 246 | 160 | 2.99E-08 | ||
| Gene3D | 89 | 300 | 212 | 1.50E-06 | ||
| ProSiteProfiles | 111 | 145 | 35 | 12.222 | ||
| TIGRFAM | 113 | 147 | 35 | 1.70E-07 | ||
| Pfam | 145 | 193 | 49 | 2.20E-14 | ||
| ProSiteProfiles | 146 | 180 | 35 | 12.189 | ||
| TIGRFAM | 149 | 182 | 34 | 3.30E-07 | ||
| ProSiteProfiles | 181 | 215 | 35 | 12.912 | ||
| TIGRFAM | 184 | 217 | 34 | 1.50E-08 | ||
| Pfam | 212 | 243 | 32 | 8.60E-06 | ||
| ProSiteProfiles | 216 | 250 | 35 | 11.926 | ||
| TIGRFAM | 219 | 251 | 33 | 2.80E-07 | ||
| Pfam | 258 | 307 | 50 | 2.70E-15 | ||
| ProSiteProfiles | 259 | 293 | 35 | 12.112 | ||
| TIGRFAM | 261 | 295 | 35 | 1.20E-07 | ||
| ProSiteProfiles | 294 | 324 | 31 | 8.155 | ||
| ProSiteProfiles | 343 | 377 | 35 | 8.013 | ||
| ProSiteProfiles | 378 | 412 | 35 | 6.643 | ||
| PANTHER | 442 | 582 | 141 | 3.60E-129 | – | |
| PANTHER | 442 | 582 | 141 | 3.60E-129 | – | |
| ProSiteProfiles | 471 | 505 | 35 | 9.536 | ||
| Pfam | 474 | 502 | 29 | 0.034 | ||
| Phobius | 589 | 615 | 27 | – | – | |
| TMHMM | 593 | 615 | 23 | – | – | |
| Phobius | 616 | 623 | 8 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v1918710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1918710.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.