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Lj3g3v2038730.1

Overview

Field Value
Gene ID Lj3g3v2038730
Transcript ID Lj3g3v2038730.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Cicer arietinum] gi|502142068|ref|XP_004504777.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23073
1 270 270 4.30E-225 –
PANTHER
PTHR23073:SF12
1 270 270 4.30E-225 –
TIGRFAM
TIGR01242
1 255 255 1.30E-118
IPR005937
Gene3D
G3DSA:3.40.50.300
3 192 190 4.50E-65
IPR027417
SUPERFAMILY
SSF52540
7 259 253 1.28E-71
IPR027417
CDD
cd00009
15 182 168 1.16E-26 –
SMART
SM00382
45 185 141 4.20E-23
IPR003593
Pfam
PF00004
49 182 134 1.60E-43
IPR003959
ProSitePatterns
PS00674
153 171 19 –
IPR003960
Gene3D
G3DSA:1.10.8.60
193 255 63 1.40E-26 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0030163
Biological process Protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v2038730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2038730.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.