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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2317940 |
| Transcript ID | Lj3g3v2317940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 9-like [Glycine max] gi|356504494|ref|XP_003521031.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | – | – | |
| PANTHER | 12 | 1513 | 1502 | 0 | – | |
| PANTHER | 12 | 1513 | 1502 | 0 | – | |
| TMHMM | 30 | 52 | 23 | – | – | |
| Phobius | 35 | 52 | 18 | – | – | |
| Phobius | 53 | 80 | 28 | – | – | |
| TMHMM | 79 | 101 | 23 | – | – | |
| Phobius | 81 | 102 | 22 | – | – | |
| Phobius | 103 | 121 | 19 | – | – | |
| TMHMM | 116 | 138 | 23 | – | – | |
| Phobius | 122 | 139 | 18 | – | – | |
| Phobius | 140 | 150 | 11 | – | – | |
| Phobius | 151 | 172 | 22 | – | – | |
| TMHMM | 151 | 173 | 23 | – | – | |
| Phobius | 173 | 177 | 5 | – | – | |
| Phobius | 178 | 198 | 21 | – | – | |
| TMHMM | 183 | 200 | 18 | – | – | |
| Phobius | 199 | 314 | 116 | – | – | |
| SUPERFAMILY | 312 | 613 | 302 | 1.96E-38 | ||
| Gene3D | 313 | 612 | 300 | 1.60E-32 | – | |
| Phobius | 315 | 335 | 21 | – | – | |
| TMHMM | 318 | 340 | 23 | – | – | |
| Pfam | 319 | 581 | 263 | 7.80E-34 | ||
| ProSiteProfiles | 319 | 597 | 279 | 38.19 | ||
| Phobius | 336 | 354 | 19 | – | – | |
| Phobius | 355 | 371 | 17 | – | – | |
| TMHMM | 355 | 377 | 23 | – | – | |
| Phobius | 372 | 427 | 56 | – | – | |
| TMHMM | 428 | 450 | 23 | – | – | |
| Phobius | 428 | 449 | 22 | – | – | |
| Phobius | 450 | 454 | 5 | – | – | |
| Phobius | 455 | 474 | 20 | – | – | |
| TMHMM | 455 | 474 | 20 | – | – | |
| Phobius | 475 | 526 | 52 | – | – | |
| Coils | 478 | 498 | 21 | – | – | |
| Phobius | 527 | 545 | 19 | – | – | |
| TMHMM | 542 | 564 | 23 | – | – | |
| Phobius | 546 | 550 | 5 | – | – | |
| Phobius | 551 | 572 | 22 | – | – | |
| Phobius | 573 | 941 | 369 | – | – | |
| SUPERFAMILY | 626 | 847 | 222 | 3.97E-56 | ||
| ProSiteProfiles | 631 | 854 | 224 | 21.542 | ||
| CDD | 631 | 831 | 201 | 1.41E-108 | – | |
| Gene3D | 634 | 858 | 225 | 3.30E-63 | ||
| Pfam | 650 | 783 | 134 | 8.70E-19 | ||
| SMART | 658 | 831 | 174 | 3.60E-13 | ||
| ProSitePatterns | 756 | 770 | 15 | – | ||
| MobiDBLite | 874 | 909 | 36 | – | – | |
| SUPERFAMILY | 931 | 1245 | 315 | 1.23E-47 | ||
| Phobius | 942 | 965 | 24 | – | – | |
| TMHMM | 942 | 964 | 23 | – | – | |
| ProSiteProfiles | 946 | 1226 | 281 | 32.925 | ||
| Gene3D | 946 | 1250 | 305 | 1.10E-53 | – | |
| Pfam | 956 | 1190 | 235 | 6.40E-31 | ||
| Phobius | 966 | 984 | 19 | – | – | |
| TMHMM | 984 | 1006 | 23 | – | – | |
| Phobius | 985 | 1011 | 27 | – | – | |
| Phobius | 1012 | 1059 | 48 | – | – | |
| Phobius | 1060 | 1078 | 19 | – | – | |
| Phobius | 1079 | 1083 | 5 | – | – | |
| TMHMM | 1080 | 1102 | 23 | – | – | |
| Phobius | 1084 | 1102 | 19 | – | – | |
| Phobius | 1103 | 1171 | 69 | – | – | |
| Phobius | 1172 | 1190 | 19 | – | – | |
| TMHMM | 1173 | 1195 | 23 | – | – | |
| Phobius | 1191 | 1518 | 328 | – | – | |
| TMHMM | 1199 | 1221 | 23 | – | – | |
| SUPERFAMILY | 1255 | 1491 | 237 | 3.37E-65 | ||
| CDD | 1261 | 1481 | 221 | 9.46E-121 | – | |
| Gene3D | 1264 | 1504 | 241 | 1.20E-62 | ||
| ProSiteProfiles | 1265 | 1497 | 233 | 16.68 | ||
| Pfam | 1280 | 1428 | 149 | 5.80E-28 | ||
| SMART | 1289 | 1474 | 186 | 5.60E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v2317940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2317940.1, powered by CORGI.
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