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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2441830 |
| Transcript ID | Lj3g3v2441830.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RING finger protein [Medicago truncatula] gi|358349275|ref|XP_003638664.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | – | – | |
| SignalP | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 2 | 12 | 11 | – | – | |
| Phobius | 13 | 17 | 5 | – | – | |
| Phobius | 18 | 234 | 217 | – | – | |
| Pfam | 20 | 120 | 101 | 5.00E-06 | ||
| TMHMM | 235 | 257 | 23 | – | – | |
| Phobius | 235 | 257 | 23 | – | – | |
| PANTHER | 249 | 371 | 123 | 6.10E-43 | – | |
| PANTHER | 249 | 371 | 123 | 6.10E-43 | – | |
| Phobius | 258 | 374 | 117 | – | – | |
| Gene3D | 314 | 359 | 46 | 2.70E-15 | ||
| CDD | 315 | 358 | 44 | 4.75E-07 | – | |
| SUPERFAMILY | 315 | 361 | 47 | 1.25E-17 | – | |
| SMART | 316 | 357 | 42 | 0.0047 | ||
| ProSiteProfiles | 316 | 358 | 43 | 12.091 | ||
| Pfam | 316 | 358 | 43 | 2.00E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polysaccharide binding | Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. |
Expression pattern of Lj3g3v2441830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2441830.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.