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Lj3g3v2576210.1

Overview

Field Value
Gene ID Lj3g3v2576210
Transcript ID Lj3g3v2576210.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 25.3 kDa vesicle transport protein-like isoform X1 [Cicer arietinum] gi|502156568|ref|XP_004510539.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF64356
1 128 128 1.10E-34
IPR011012
Gene3D
G3DSA:3.30.450.50
1 115 115 3.90E-50
IPR010908
Phobius
CYTOPLASMIC_DOMAIN
1 192 192 – –
PANTHER
PTHR21136:SF89
1 213 213 1.20E-168 –
PANTHER
PTHR21136
1 213 213 1.20E-168 –
ProSiteProfiles
PS50859
6 120 115 28.892
IPR010908
SMART
SM01270
35 119 85 6.00E-30
IPR010908
Pfam
PF13774
37 118 82 1.40E-22
IPR010908
Gene3D
G3DSA:1.10.3840.10
116 212 97 4.70E-20
IPR001388
SUPERFAMILY
SSF58038
130 197 68 1.47E-13 –
Pfam
PF00957
133 213 81 1.10E-17
IPR001388
CDD
cd15866
133 196 64 1.37E-30 –
ProSiteProfiles
PS50892
135 195 61 13.929
IPR001388
TMHMM
TMhelix
193 212 20 – –
Phobius
TRANSMEMBRANE
193 213 21 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
214 218 5 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj3g3v2576210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2576210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.