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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2990300 |
| Transcript ID | Lj3g3v2990300.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: vesicle-associated membrane protein 714-like [Cicer arietinum] gi|502145830|ref|XP_004506198.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 16 | 16 | – | – | |
| Phobius | 1 | 189 | 189 | – | – | |
| Gene3D | 1 | 108 | 108 | 2.70E-38 | ||
| PANTHER | 1 | 220 | 220 | 6.60E-180 | – | |
| PANTHER | 1 | 220 | 220 | 6.60E-180 | – | |
| SUPERFAMILY | 3 | 118 | 116 | 1.10E-31 | ||
| ProSiteProfiles | 7 | 111 | 105 | 33.056 | ||
| SMART | 28 | 110 | 83 | 9.20E-29 | ||
| Pfam | 29 | 108 | 80 | 7.40E-24 | ||
| Gene3D | 109 | 210 | 102 | 9.20E-37 | ||
| SUPERFAMILY | 121 | 188 | 68 | 6.80E-21 | – | |
| Pfam | 124 | 211 | 88 | 9.50E-31 | ||
| CDD | 125 | 184 | 60 | 3.53E-26 | – | |
| ProSiteProfiles | 126 | 186 | 61 | 18.118 | ||
| PRINTS | 131 | 150 | 20 | 2.60E-12 | ||
| ProSitePatterns | 144 | 163 | 20 | – | ||
| PRINTS | 151 | 170 | 20 | 2.60E-12 | ||
| PRINTS | 187 | 206 | 20 | 2.60E-12 | ||
| Phobius | 190 | 215 | 26 | – | – | |
| TMHMM | 191 | 213 | 23 | – | – | |
| Phobius | 216 | 220 | 5 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of Lj3g3v2990300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2990300.1, powered by CORGI.
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