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Lj3g3v3006550.1

Overview

Field Value
Gene ID Lj3g3v3006550
Transcript ID Lj3g3v3006550.1
Lotus japonicus genome version MG20 v3.0
Description Zinc finger C-x8-C-x5-C-x3-H type family protein [Theobroma cacao] gi|508786323|gb|EOY33579.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12620:SF16
1 281 281 5.50E-196 –
PANTHER
PTHR12620
1 281 281 5.50E-196
IPR009145
ProSiteProfiles
PS50103
12 40 29 13.112
IPR000571
SMART
SM00356
13 39 27 0.0065
IPR000571
Pfam
PF00642
14 37 24 4.00E-07
IPR000571
PRINTS
PR01848
18 37 20 1.70E-60
IPR009145
PRINTS
PR01848
37 57 21 1.70E-60
IPR009145
Gene3D
G3DSA:3.30.70.330
44 145 102 1.70E-21
IPR012677
CDD
cd12539
44 145 102 1.46E-61 –
ProSiteProfiles
PS50102
44 146 103 9.661
IPR000504
PRINTS
PR01848
75 90 16 1.70E-60
IPR009145
SUPERFAMILY
SSF54928
77 149 73 6.85E-15
IPR012677
PRINTS
PR01848
103 125 23 1.70E-60
IPR009145
PRINTS
PR01848
130 154 25 1.70E-60
IPR009145
SMART
SM00356
148 174 27 0.48
IPR000571
ProSiteProfiles
PS50103
148 175 28 10.211
IPR000571
PRINTS
PR01848
165 177 13 1.70E-60
IPR009145
MobiDBLite
mobidb-lite
187 283 97 – –
Coils
Coil
259 279 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0089701
Cellular component U2AF A heterodimeric protein complex consisting of conserved large and small U2AF subunits that contributes to spliceosomal RNA splicing by binding to consensus sequences at the 3' splice site. U2AF is required to stabilize the association of the U2 snRNP with the branch point.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v3006550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3006550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.