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PR01848

Source: PRINTS

Description

U2 auxiliary factor small subunit signature

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0089701
Cellular component U2AF A heterodimeric protein complex consisting of conserved large and small U2AF subunits that contributes to spliceosomal RNA splicing by binding to consensus sequences at the 3' splice site. U2AF is required to stabilize the association of the U2 snRNP with the branch point.
Subterm of

Associated Lotus transcripts 16

Transcript Name Description Predicted domains Domain count
Lj0g3v0004639.1
– Zinc finger C-x8-C-x5-C-x3-H type family protein [Theobroma cacao] gi|508786323|gb|EOY33579.1|
Domains
19
Lj0g3v0180079.1
– Splicing factor U2af subunit isoform 1 [Zea mays] gi|413948479|gb|AFW81128.1|
Domains
11
Lj0g3v0290279.1
– PREDICTED: zinc finger CCCH domain-containing protein 5-like [Glycine max] gi|356528629|ref|XP_003532902.1|
Domains
17
Lj0g3v0290329.1
– Zinc finger CCCH domain-containing protein 5 [Arabidopsis thaliana] gi|15218489|ref|NP_172503.1|
Domains
9
Lj0g3v0290329.2
– U2 auxiliary factor small subunit [Medicago truncatula] gi|140053487|gb|ABO80462.1|
Domains
9
Lj0g3v0290329.3
– Zinc finger CCCH domain-containing protein 5 [Arabidopsis thaliana] gi|15218489|ref|NP_172503.1|
Domains
11
Lj1g3v4694450.1
– PREDICTED: splicing factor U2af small subunit B-like [Glycine max] gi|356505320|ref|XP_003521439.1|
Domains
17
Lj3g3v3006550.1
– Zinc finger C-x8-C-x5-C-x3-H type family protein [Theobroma cacao] gi|508786323|gb|EOY33579.1|
Domains
16
LotjaGi1g1v0680100.1
– Splicing factor U2af small subunit A-like protein; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|I3SLP5|I3SLP5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680100
Domains
18
LotjaGi2g1v0011500.1
– Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|A0A1D1Z0R2|A0A1D1Z0R2_9ARAE Splicing factor U2af small subunit A; Found in the gene: LotjaGi2g1v0011500
Domains
20
LotjaGi2g1v0011500.2
– Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|A0A1D1Z0R2|A0A1D1Z0R2_9ARAE Splicing factor U2af small subunit A; Found in the gene: LotjaGi2g1v0011500
Domains
20
LotjaGi3g1v0172600.1
– Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A; TrEMBL-Plants: tr|A0A1J7IB44|A0A1J7IB44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0172600
Domains
20
LotjaGi3g1v0481000.1
– Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A; TrEMBL-Plants: tr|A0A1J7IB44|A0A1J7IB44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481000
Domains
17
LotjaGi5g1v0035100.1
– Zinc finger CCCH domain protein, putative; TAIR: AT1G10320.2 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5; TrEMBL-Plants: tr|A0A178W6J5|A0A178W6J5_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0035100
Domains
9
LotjaGi5g1v0035100.2
– Zinc finger CCCH domain protein, putative; TAIR: AT1G10320.2 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5; TrEMBL-Plants: tr|A0A178W6J5|A0A178W6J5_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0035100
Domains
9
LotjaGi5g1v0035100.3
– Zinc finger CCCH domain protein, putative; TAIR: AT1G10320.2 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5; TrEMBL-Plants: tr|A0A178W6J5|A0A178W6J5_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0035100
Domains
9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 6.25