Domain Predictions — View

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PS00333

Source: ProSitePatterns

Description

ATP-dependent DNA ligase signature 2.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003909 View details of GO:0003909 AmiGO InterPro QuickGO	Molecular function	DNA ligase activity	Catalysis of the formation of a phosphodiester bond between the 3'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. This reaction requires an energy source such as ATP or NAD+.	Subterm of GO:0016886 GO:0140097
GO:0051103 View details of GO:0051103 AmiGO InterPro QuickGO	Biological process	DNA ligation involved in DNA repair	The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA repair.	Subterm of GO:0006266 Part of GO:0006281

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v3033290.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA ligase 1-like isoform X1 [Cicer arietinum] gi\|502145536\|ref\|XP_004506069.1\|	Domains Coil G3DSA:1.10.3260.10 G3DSA:2.40.50.140 G3DSA:3.30.1490.70 G3DSA:3.30.470.30 IPR000977 IPR012308 IPR012309 IPR012310 IPR012340 IPR016059 PF01068 PF04675 PF04679 PS00333 PS00697 PS50160 PTHR10459 PTHR10459:SF10 SSF117018 SSF50249 SSF56091 TIGR00574 cd07900 cd07969 mobidb-lite	26
LotjaGi3g1v0485100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA ligase; TAIR: AT1G08130.1 DNA ligase 1; Swiss-Prot: sp\|Q42572\|DNLI1_ARATH DNA ligase 1; TrEMBL-Plants: tr\|A0A072UVT2\|A0A072UVT2_MEDTR DNA ligase; Found in the gene: LotjaGi3g1v0485100	Domains Coil G3DSA:1.10.3260.10 G3DSA:2.40.50.140 G3DSA:3.30.1490.70 G3DSA:3.30.470.30 IPR000977 IPR012308 IPR012309 IPR012310 IPR012340 IPR016059 IPR036599 PF01068 PF04675 PF04679 PS00333 PS00697 PS50160 PTHR45674 PTHR45674:SF4 SSF117018 SSF50249 SSF56091 TIGR00574 cd07900 cd07969 mobidb-lite	27
LotjaGi6g1v0235200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA ligase; TAIR: AT5G57160.2 DNA ligase IV; Swiss-Prot: sp\|Q9LL84\|DNLI4_ARATH DNA ligase 4; TrEMBL-Plants: tr\|K7MBU8\|K7MBU8_SOYBN DNA ligase; Found in the gene: LotjaGi6g1v0235200	Domains G3DSA:2.40.50.140 G3DSA:3.30.470.30 G3DSA:3.40.50.10190 IPR001357 IPR012309 IPR012310 IPR012340 IPR016059 IPR029710 IPR036420 PF01068 PF04679 PF16589 PS00333 PS50160 PS50172 PTHR45997 PTHR45997:SF1 SM00292 SSF50249 SSF52113 SSF56091 cd07968 cd17717 cd17722 mobidb-lite	26
LotjaGi6g1v0235200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA ligase; TAIR: AT5G57160.1 DNA ligase IV; Swiss-Prot: sp\|Q9LL84\|DNLI4_ARATH DNA ligase 4; TrEMBL-Plants: tr\|K7MBU8\|K7MBU8_SOYBN DNA ligase; Found in the gene: LotjaGi6g1v0235200	Domains Coil G3DSA:1.10.3260.10 G3DSA:2.40.50.140 G3DSA:3.30.470.30 G3DSA:3.40.50.10190 IPR000977 IPR001357 IPR012308 IPR012309 IPR012310 IPR012340 IPR016059 IPR029710 IPR036420 IPR036599 PF01068 PF04675 PF04679 PF16589 PS00333 PS00697 PS50160 PS50172 PTHR45997 PTHR45997:SF1 SM00292 SSF117018 SSF50249 SSF52113 SSF56091 TIGR00574 cd07903 cd07968 cd17717 cd17722 mobidb-lite	36

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00