Domain Predictions — View

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cd07969

Source: CDD

Description

OBF_DNA_ligase_I

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v3033290.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA ligase 1-like isoform X1 [Cicer arietinum] gi\|502145536\|ref\|XP_004506069.1\|	Domains Coil G3DSA:1.10.3260.10 G3DSA:2.40.50.140 G3DSA:3.30.1490.70 G3DSA:3.30.470.30 IPR000977 IPR012308 IPR012309 IPR012310 IPR012340 IPR016059 PF01068 PF04675 PF04679 PS00333 PS00697 PS50160 PTHR10459 PTHR10459:SF10 SSF117018 SSF50249 SSF56091 TIGR00574 cd07900 cd07969 mobidb-lite	26
LotjaGi1g1v0545100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA ligase; TAIR: AT1G66730.1 DNA LIGASE 6; Swiss-Prot: sp\|F4HPZ9\|LIG6_ARATH DNA ligase 6; TrEMBL-Plants: tr\|G7KV95\|G7KV95_MEDTR DNA ligase; Found in the gene: LotjaGi1g1v0545100	Domains G3DSA:1.10.3260.10 G3DSA:2.40.50.140 G3DSA:3.30.1490.70 G3DSA:3.30.470.30 IPR000977 IPR012308 IPR012309 IPR012310 IPR012340 IPR016059 IPR036599 NON_CYTOPLASMIC_DOMAIN PF01068 PF04675 PF04679 PS00697 PS50160 PTHR45674 PTHR45674:SF8 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF117018 SSF50249 SSF56091 SignalP-TM SignalP-noTM TIGR00574 cd07900 cd07969	31
LotjaGi1g1v0545100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA ligase; TAIR: AT1G66730.1 DNA LIGASE 6; Swiss-Prot: sp\|F4HPZ9\|LIG6_ARATH DNA ligase 6; TrEMBL-Plants: tr\|A0A0L9TDF0\|A0A0L9TDF0_PHAAN DNA ligase; Found in the gene: LotjaGi1g1v0545100	Domains G3DSA:1.10.3260.10 G3DSA:2.40.50.140 G3DSA:3.30.1490.70 G3DSA:3.30.470.30 G3DSA:3.40.50.12650 G3DSA:3.60.15.10 IPR000977 IPR001279 IPR011084 IPR012308 IPR012309 IPR012310 IPR012340 IPR016059 IPR036599 IPR036866 PF01068 PF04675 PF04679 PF07522 PS00697 PS50160 PTHR45674 PTHR45674:SF8 SM00849 SSF117018 SSF50249 SSF56091 SSF56281 TIGR00574 cd07900 cd07969 cd16273 mobidb-lite	34
LotjaGi3g1v0485100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA ligase; TAIR: AT1G08130.1 DNA ligase 1; Swiss-Prot: sp\|Q42572\|DNLI1_ARATH DNA ligase 1; TrEMBL-Plants: tr\|A0A072UVT2\|A0A072UVT2_MEDTR DNA ligase; Found in the gene: LotjaGi3g1v0485100	Domains Coil G3DSA:1.10.3260.10 G3DSA:2.40.50.140 G3DSA:3.30.1490.70 G3DSA:3.30.470.30 IPR000977 IPR012308 IPR012309 IPR012310 IPR012340 IPR016059 IPR036599 PF01068 PF04675 PF04679 PS00333 PS00697 PS50160 PTHR45674 PTHR45674:SF4 SSF117018 SSF50249 SSF56091 TIGR00574 cd07900 cd07969 mobidb-lite	27

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00