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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012310
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.079s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0256839.1
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356568041|ref|XP_003552222.1| chr0 133328014 133337632 -
2 domain predictions
4 GO terms
Lj0g3v0256839.2
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356568041|ref|XP_003552222.1| chr0 133328014 133337632 -
2 domain predictions
4 GO terms
Lj1g3v3244630.2
n.a. PREDICTED: DNA ligase 1-like, partial [Cicer arietinum] gi|502106786|ref|XP_004493055.1| chr1 36716902 36731171 -
2 domain predictions
4 GO terms
Lj3g3v1603870.2
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356496154|ref|XP_003516935.1| chr3 20307783 20324220 -
2 domain predictions
4 GO terms
Lj3g3v3033290.1
n.a. PREDICTED: DNA ligase 1-like isoform X1 [Cicer arietinum] gi|502145536|ref|XP_004506069.1| chr3 38003286 38016165 +
3 domain predictions
4 GO terms
Lj6g3v1330870.1
n.a. PREDICTED: DNA ligase 4-like [Cicer arietinum] gi|502085757|ref|XP_004487997.1| chr6 15828644 15838993 -
2 domain predictions
4 GO terms
LotjaGi1g1v0545100.1
n.a. DNA ligase; TAIR: AT1G66730.1 DNA LIGASE 6; Swiss-Prot: sp|F4HPZ9|LIG6_ARATH DNA ligase 6; TrEMBL-Plants: tr|G7KV95|G7KV95_MEDTR DNA ligase; Found in the gene: LotjaGi1g1v0545100 LjG1.1_chr1 107437605 107451843 -
3 domain predictions
4 GO terms
LotjaGi1g1v0545100.2
n.a. DNA ligase; TAIR: AT1G66730.1 DNA LIGASE 6; Swiss-Prot: sp|F4HPZ9|LIG6_ARATH DNA ligase 6; TrEMBL-Plants: tr|A0A0L9TDF0|A0A0L9TDF0_PHAAN DNA ligase; Found in the gene: LotjaGi1g1v0545100 LjG1.1_chr1 107437610 107451847 -
3 domain predictions
4 GO terms
LotjaGi1g1v0572100.1
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7MTE7|K7MTE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0572100 LjG1.1_chr1 110569859 110582766 -
2 domain predictions
4 GO terms
LotjaGi1g1v0572100.2
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7MTE7|K7MTE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0572100 LjG1.1_chr1 110573483 110580978 -
2 domain predictions
4 GO terms
LotjaGi1g1v0572100.3
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|A0A0R0FB81|A0A0R0FB81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0572100 LjG1.1_chr1 110573483 110580978 -
2 domain predictions
4 GO terms
LotjaGi1g1v0572100.4
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7MTE7|K7MTE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0572100 LjG1.1_chr1 110573483 110580978 -
2 domain predictions
4 GO terms
LotjaGi3g1v0215700.2
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7K355|K7K355_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0215700 LjG1.1_chr3 32374377 32390993 -
2 domain predictions
4 GO terms
LotjaGi3g1v0215700.3
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|A0A151RAA8|A0A151RAA8_CAJCA mRNA-capping enzyme; Found in the gene: LotjaGi3g1v0215700 LjG1.1_chr3 32374844 32390402 -
2 domain predictions
4 GO terms
LotjaGi3g1v0215700.4
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7K355|K7K355_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0215700 LjG1.1_chr3 32374844 32390402 -
2 domain predictions
4 GO terms
LotjaGi3g1v0485100.1
n.a. DNA ligase; TAIR: AT1G08130.1 DNA ligase 1; Swiss-Prot: sp|Q42572|DNLI1_ARATH DNA ligase 1; TrEMBL-Plants: tr|A0A072UVT2|A0A072UVT2_MEDTR DNA ligase; Found in the gene: LotjaGi3g1v0485100 LjG1.1_chr3 90223559 90234798 +
3 domain predictions
4 GO terms
LotjaGi6g1v0235200.1
n.a. DNA ligase; TAIR: AT5G57160.2 DNA ligase IV; Swiss-Prot: sp|Q9LL84|DNLI4_ARATH DNA ligase 4; TrEMBL-Plants: tr|K7MBU8|K7MBU8_SOYBN DNA ligase; Found in the gene: LotjaGi6g1v0235200 LjG1.1_chr6 54499461 54514433 -
3 domain predictions
4 GO terms
LotjaGi6g1v0235200.2
n.a. DNA ligase; TAIR: AT5G57160.1 DNA ligase IV; Swiss-Prot: sp|Q9LL84|DNLI4_ARATH DNA ligase 4; TrEMBL-Plants: tr|K7MBU8|K7MBU8_SOYBN DNA ligase; Found in the gene: LotjaGi6g1v0235200 LjG1.1_chr6 54499906 54514392 -
3 domain predictions
4 GO terms