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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3119750 |
| Transcript ID | Lj3g3v3119750.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 484 | 484 | – | – | |
| PANTHER | 33 | 68 | 36 | 1.10E-135 | – | |
| PANTHER | 33 | 68 | 36 | 1.10E-135 | – | |
| PANTHER | 85 | 172 | 88 | 1.10E-135 | – | |
| SUPERFAMILY | 85 | 221 | 137 | 1.61E-05 | ||
| PANTHER | 85 | 172 | 88 | 1.10E-135 | – | |
| ProSiteProfiles | 86 | 120 | 35 | 11.444 | ||
| Gene3D | 87 | 173 | 87 | 2.10E-06 | ||
| Pfam | 89 | 118 | 30 | 1.10E-05 | ||
| TIGRFAM | 89 | 121 | 33 | 7.50E-05 | ||
| Pfam | 120 | 168 | 49 | 8.10E-14 | ||
| ProSiteProfiles | 121 | 155 | 35 | 12.332 | ||
| TIGRFAM | 123 | 157 | 35 | 8.90E-07 | ||
| ProSiteProfiles | 156 | 190 | 35 | 12.671 | ||
| TIGRFAM | 159 | 192 | 34 | 6.80E-08 | ||
| PANTHER | 204 | 314 | 111 | 1.10E-135 | – | |
| PANTHER | 204 | 314 | 111 | 1.10E-135 | – | |
| Pfam | 221 | 271 | 51 | 2.30E-13 | ||
| ProSiteProfiles | 222 | 258 | 37 | 11.619 | ||
| TIGRFAM | 224 | 260 | 37 | 7.30E-06 | ||
| SUPERFAMILY | 258 | 363 | 106 | 1.61E-05 | ||
| ProSiteProfiles | 259 | 293 | 35 | 11.827 | ||
| Gene3D | 259 | 367 | 109 | 2.10E-06 | ||
| TIGRFAM | 262 | 294 | 33 | 7.40E-07 | ||
| Pfam | 282 | 332 | 51 | 0.0022 | ||
| ProSiteProfiles | 294 | 328 | 35 | 10.435 | ||
| TIGRFAM | 297 | 328 | 32 | 9.10E-05 | ||
| Pfam | 336 | 385 | 50 | 4.00E-11 | ||
| PANTHER | 336 | 401 | 66 | 1.10E-135 | – | |
| PANTHER | 336 | 401 | 66 | 1.10E-135 | – | |
| ProSiteProfiles | 337 | 371 | 35 | 11.531 | ||
| TIGRFAM | 339 | 373 | 35 | 2.90E-06 | ||
| ProSiteProfiles | 372 | 402 | 31 | 7.18 | ||
| PANTHER | 422 | 507 | 86 | 1.10E-135 | – | |
| PANTHER | 422 | 507 | 86 | 1.10E-135 | – | |
| ProSiteProfiles | 426 | 460 | 35 | 9.668 | ||
| Pfam | 429 | 457 | 29 | 0.071 | ||
| Phobius | 485 | 504 | 20 | – | – | |
| Phobius | 505 | 572 | 68 | – | – | |
| ProSiteProfiles | 511 | 545 | 35 | 5.799 | ||
| PANTHER | 523 | 657 | 135 | 1.10E-135 | – | |
| PANTHER | 523 | 657 | 135 | 1.10E-135 | – | |
| ProSiteProfiles | 546 | 580 | 35 | 9.854 | ||
| TIGRFAM | 549 | 580 | 32 | 0.0014 | ||
| Pfam | 549 | 578 | 30 | 0.014 | ||
| Phobius | 573 | 593 | 21 | – | – | |
| Phobius | 594 | 662 | 69 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3119750.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3119750.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.