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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3409060 |
| Transcript ID | Lj3g3v3409060.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cicer arietinum] gi|502144990|ref|XP_004505826.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 73 | 73 | – | – | |
| Phobius | 74 | 94 | 21 | – | – | |
| Phobius | 95 | 1121 | 1027 | – | – | |
| ProSiteProfiles | 427 | 461 | 35 | 6.193 | ||
| PANTHER | 435 | 465 | 31 | 2.30E-180 | – | |
| PANTHER | 435 | 465 | 31 | 2.30E-180 | – | |
| Pfam | 438 | 459 | 22 | 0.64 | ||
| ProSiteProfiles | 494 | 528 | 35 | 8.758 | ||
| Pfam | 497 | 635 | 139 | 8.00E-14 | ||
| TIGRFAM | 497 | 530 | 34 | 2.80E-04 | ||
| PANTHER | 497 | 860 | 364 | 2.30E-180 | – | |
| PANTHER | 497 | 860 | 364 | 2.30E-180 | – | |
| ProSiteProfiles | 529 | 563 | 35 | 10.928 | ||
| TIGRFAM | 532 | 564 | 33 | 4.00E-07 | ||
| ProSiteProfiles | 564 | 598 | 35 | 11.137 | ||
| TIGRFAM | 567 | 599 | 33 | 1.80E-06 | ||
| ProSiteProfiles | 599 | 629 | 31 | 9.876 | ||
| TIGRFAM | 601 | 627 | 27 | 0.0014 | ||
| Gene3D | 604 | 811 | 208 | 1.90E-06 | ||
| ProSiteProfiles | 636 | 670 | 35 | 10.128 | ||
| TIGRFAM | 638 | 669 | 32 | 2.70E-04 | ||
| Pfam | 644 | 785 | 142 | 5.20E-12 | ||
| ProSiteProfiles | 671 | 705 | 35 | 10.687 | ||
| TIGRFAM | 674 | 707 | 34 | 8.70E-07 | ||
| ProSiteProfiles | 706 | 740 | 35 | 6.939 | ||
| ProSiteProfiles | 741 | 775 | 35 | 9.186 | ||
| ProSiteProfiles | 776 | 810 | 35 | 10.907 | ||
| TIGRFAM | 779 | 811 | 33 | 1.70E-06 | ||
| Pfam | 798 | 857 | 60 | 5.80E-04 | ||
| ProSiteProfiles | 811 | 845 | 35 | 8.254 | ||
| Coils | 821 | 841 | 21 | – | – | |
| ProSiteProfiles | 937 | 973 | 37 | 5.722 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3409060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3409060.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.