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Lj4g3v0014220.1

Overview

Field Value
Gene ID Lj4g3v0014220
Transcript ID Lj4g3v0014220.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Fragaria vesca subsp]. vesca] gi|470128173|ref|XP_004300022.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 40 40 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 19 19 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
20 28 9 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
29 40 12 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
41 526 486 – –
MobiDBLite
mobidb-lite
44 75 32 – –
PANTHER
PTHR11262:SF9
47 513 467 2.60E-238 –
PANTHER
PTHR11262
47 513 467 2.60E-238 –
MobiDBLite
mobidb-lite
152 180 29 – –
Gene3D
G3DSA:3.40.50.300
178 360 183 2.70E-41
IPR027417
SUPERFAMILY
SSF52540
178 485 308 2.32E-48
IPR027417
CDD
cd00009
232 322 91 4.00E-11 –
Pfam
PF07724
234 421 188 1.80E-36
IPR003959
SMART
SM00382
234 370 137 5.20E-09
IPR003593
Gene3D
G3DSA:3.40.50.300
411 442 32 2.70E-41
IPR027417
SMART
SM01086
428 496 69 9.30E-06
IPR019489
Pfam
PF10431
435 483 49 1.90E-09
IPR019489
Gene3D
G3DSA:1.10.8.60
443 497 55 3.20E-17 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj4g3v0014220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0014220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.