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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019489
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 47 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.377s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0058969.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Fragaria vesca subsp]. vesca] gi|470128173|ref|XP_004300022.1| chr0 19474318 19479241 +
3 domain predictions
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Lj0g3v0231049.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Glycine max] gi|356509253|ref|XP_003523365.1| chr0 119775454 119777953 +
3 domain predictions
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Lj0g3v0273379.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Cicer arietinum] gi|502162893|ref|XP_004512653.1| chr0 141690230 141699140 +
3 domain predictions
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Lj1g3v1386490.1
n.a. PREDICTED: chaperone protein ClpD, chloroplastic-like [Glycine max] gi|356507402|ref|XP_003522456.1| chr1 16966735 16973035 -
3 domain predictions
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Lj1g3v1818790.1
n.a. n.a. chr1 22133777 22139250 -
3 domain predictions
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Lj1g3v1818790.2
n.a. PREDICTED: chaperone protein ClpB4, mitochondrial-like [Cicer arietinum] gi|502132470|ref|XP_004501376.1| chr1 22133777 22140923 -
3 domain predictions
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Lj1g3v2996640.1
n.a. PREDICTED: chaperone protein ClpB3, chloroplastic-like isoform X1 [Cicer arietinum] gi|502101806|ref|XP_004491878.1| chr1 34124969 34132072 -
3 domain predictions
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Lj1g3v2996640.2
n.a. PREDICTED: chaperone protein ClpB3, chloroplastic-like isoform X2 [Cicer arietinum] gi|502101810|ref|XP_004491879.1| chr1 34124969 34131041 -
3 domain predictions
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Lj1g3v4690470.1
n.a. PREDICTED: chaperone protein ClpC, chloroplastic-like [Glycine max] gi|356513459|ref|XP_003525431.1| chr1 55531515 55534998 -
3 domain predictions
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Lj2g3v1069410.1
n.a. Chaperone protein clpB [Medicago truncatula] gi|357496641|ref|XP_003618609.1| chr2 17440851 17451912 -
3 domain predictions
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Lj2g3v1069410.2
n.a. Chaperone protein clpB [Medicago truncatula] gi|357496641|ref|XP_003618609.1| chr2 17440851 17451459 -
3 domain predictions
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Lj4g3v0014220.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Fragaria vesca subsp]. vesca] gi|470128173|ref|XP_004300022.1| chr4 191560 195873 -
3 domain predictions
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Lj4g3v1687570.1
n.a. heat shock protein [Glycine max] gi|351725607|ref|NP_001238122.1| chr4 24581778 24585718 +
3 domain predictions
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Lj4g3v2882010.2
n.a. PREDICTED: chaperone protein ClpC, chloroplastic-like isoform 1 [Glycine max] gi|356508861|ref|XP_003523172.1| chr4 38486905 38493138 +
3 domain predictions
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LotjaGi1g1v0286700.1
n.a. ATP-dependent Clp protease ATP-binding subunit clpX; TAIR: AT5G53350.1 CLP protease regulatory subunit X; Swiss-Prot: sp|Q9FK07|CLPX1_ARATH CLP protease regulatory subunit CLPX1, mitochondrial; TrEMBL-Plants: tr|A0A0S3RDV9|A0A0S3RDV9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0286700 LjG1.1_chr1 69583512 69591979 +
3 domain predictions
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LotjaGi1g1v0330800.1
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G51070.1 Clp ATPase; Swiss-Prot: sp|P42762|CLPD_ARATH Chaperone protein ClpD, chloroplastic; TrEMBL-Plants: tr|I1JXT1|I1JXT1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0330800 LjG1.1_chr1 78660324 78667371 -
3 domain predictions
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LotjaGi1g1v0333900.1
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900 LjG1.1_chr1 79247438 79255010 +
3 domain predictions
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LotjaGi1g1v0333900.2
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A0L9UEV5|A0A0L9UEV5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900 LjG1.1_chr1 79247590 79254989 +
3 domain predictions
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LotjaGi1g1v0333900.3
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900 LjG1.1_chr1 79248894 79254523 +
3 domain predictions
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LotjaGi1g1v0378600.1
n.a. ATP-dependent chaperone ClpB; TAIR: AT2G25140.1 casein lytic proteinase B4; Swiss-Prot: sp|Q8VYJ7|CLPB4_ARATH Chaperone protein ClpB4, mitochondrial; TrEMBL-Plants: tr|I1JU82|I1JU82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0378600 LjG1.1_chr1 85840257 85852851 -
3 domain predictions
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LotjaGi1g1v0509100.1
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A151TCE6|A0A151TCE6_CAJCA Chaperone protein clpB 2; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813727 102820891 -
3 domain predictions
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LotjaGi1g1v0509100.2
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A151TCE6|A0A151TCE6_CAJCA Chaperone protein clpB 2; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813964 102817888 -
3 domain predictions
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LotjaGi1g1v0509100.3
n.a. Chaperone clpb, putative; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A1J7HJB5|A0A1J7HJB5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813964 102819645 -
3 domain predictions
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LotjaGi1g1v0509100.4
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A072U702|A0A072U702_MEDTR Casein lytic proteinase B3; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813964 102819967 -
3 domain predictions
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LotjaGi1g1v0509100.5
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A072U702|A0A072U702_MEDTR Casein lytic proteinase B3; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813964 102819968 -
3 domain predictions
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LotjaGi1g1v0684200.1
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125107647 125113747 +
3 domain predictions
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LotjaGi1g1v0684200.2
n.a. ATP-dependent Clp protease ATP-binding subunit ClpB; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A1J7GIN0|A0A1J7GIN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125108085 125113398 +
3 domain predictions
 –
LotjaGi1g1v0684200.3
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125108118 125113398 +
3 domain predictions
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LotjaGi1g1v0684200.4
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125108118 125113528 +
3 domain predictions
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LotjaGi1g1v0684200.5
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125108142 125113551 +
3 domain predictions
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LotjaGi2g1v0162800.1
n.a. ATP-dependent Clp protease ATP-binding subunit ClpX; TAIR: AT1G33360.1 ATP-dependent Clp protease; Swiss-Prot: sp|Q66GN9|CLPX3_ARATH CLP protease regulatory subunit CLPX3, mitochondrial; TrEMBL-Plants: tr|I1MQ99|I1MQ99_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0162800 LjG1.1_chr2 56891936 56902216 -
3 domain predictions
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LotjaGi2g1v0162800.2
n.a. ATP-dependent Clp protease ATP-binding subunit ClpX; TAIR: AT1G33360.1 ATP-dependent Clp protease; Swiss-Prot: sp|Q66GN9|CLPX3_ARATH CLP protease regulatory subunit CLPX3, mitochondrial; TrEMBL-Plants: tr|I1MQ99|I1MQ99_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0162800 LjG1.1_chr2 56891936 56902216 -
3 domain predictions
 –
LotjaGi2g1v0264100.1
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346134 73357894 -
3 domain predictions
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LotjaGi2g1v0264100.2
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346757 73357132 -
3 domain predictions
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LotjaGi2g1v0264100.3
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346757 73357140 -
3 domain predictions
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LotjaGi2g1v0264100.4
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346920 73353704 -
3 domain predictions
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LotjaGi2g1v0264100.5
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346920 73353754 -
3 domain predictions
 –
LotjaGi2g1v0264100.6
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346920 73356817 -
3 domain predictions
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LotjaGi2g1v0264100.7
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346920 73357140 -
3 domain predictions
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LotjaGi4g1v0001900.1
n.a. ATP-dependent Clp protease ATP-binding subunit ClpX; TAIR: AT5G49840.2 ATP-dependent Clp protease; Swiss-Prot: sp|F4K7F6|CLPX2_ARATH CLP protease regulatory subunit CLPX2, mitochondrial; TrEMBL-Plants: tr|A0A061GFF2|A0A061GFF2_THECC ATP-dependent Clp protease isoform 2; Found in the gene: LotjaGi4g1v0001900 LjG1.1_chr4 368460 374180 -
3 domain predictions
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LotjaGi4g1v0253800.1
n.a. Chaperone clpb, putative; TAIR: AT1G74310.1 heat shock protein 101; Swiss-Prot: sp|P42730|CLPB1_ARATH Chaperone protein ClpB1; TrEMBL-Plants: tr|A0A1J7I0F2|A0A1J7I0F2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0253800 LjG1.1_chr4 60778852 60783093 +
3 domain predictions
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LotjaGi4g1v0253800.3
n.a. Chaperone clpb, putative; TAIR: AT1G74310.1 heat shock protein 101; Swiss-Prot: sp|P42730|CLPB1_ARATH Chaperone protein ClpB1; TrEMBL-Plants: tr|A0A1J7I0F2|A0A1J7I0F2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0253800 LjG1.1_chr4 60779470 60782708 +
3 domain predictions
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LotjaGi4g1v0421200.1
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200 LjG1.1_chr4 79625232 79631604 -
3 domain predictions
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LotjaGi4g1v0421200.2
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200 LjG1.1_chr4 79625592 79630944 -
3 domain predictions
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LotjaGi4g1v0421200.3
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200 LjG1.1_chr4 79625667 79630935 -
3 domain predictions
 –
LotjaGi4g1v0421200.4
n.a. ATP-dependent Clp protease ATP-binding subunit ClpB; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A1J7GIN0|A0A1J7GIN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200 LjG1.1_chr4 79625667 79631104 -
3 domain predictions
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LotjaGi5g1v0195500.1
n.a. ATP-dependent Clp protease ATP-binding subunit ClpX; TAIR: AT5G53350.1 CLP protease regulatory subunit X; Swiss-Prot: sp|Q9FK07|CLPX1_ARATH CLP protease regulatory subunit CLPX1, mitochondrial; TrEMBL-Plants: tr|A0A1J7G8K0|A0A1J7G8K0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0195500 LjG1.1_chr5 49091929 49105622 -
3 domain predictions
 –