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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0231930 |
| Transcript ID | Lj4g3v0231930.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial-like [Cicer arietinum] gi|502141840|ref|XP_004504664.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 131 | 657 | 527 | 0 | – | |
| PANTHER | 131 | 657 | 527 | 0 | – | |
| ProSiteProfiles | 182 | 216 | 35 | 6.555 | ||
| ProSiteProfiles | 220 | 254 | 35 | 6.445 | ||
| Gene3D | 255 | 307 | 53 | 6.00E-04 | ||
| Pfam | 255 | 303 | 49 | 2.10E-09 | ||
| ProSiteProfiles | 255 | 289 | 35 | 10.03 | ||
| TIGRFAM | 258 | 290 | 33 | 1.60E-04 | ||
| ProSiteProfiles | 290 | 324 | 35 | 12.923 | ||
| TIGRFAM | 293 | 324 | 32 | 1.50E-06 | ||
| ProSiteProfiles | 325 | 359 | 35 | 10.205 | ||
| TIGRFAM | 328 | 359 | 32 | 5.80E-04 | ||
| Pfam | 331 | 356 | 26 | 0.0061 | ||
| ProSiteProfiles | 360 | 394 | 35 | 11.619 | ||
| TIGRFAM | 363 | 395 | 33 | 3.40E-07 | ||
| Gene3D | 363 | 458 | 96 | 6.00E-04 | ||
| Pfam | 363 | 391 | 29 | 1.20E-05 | ||
| ProSiteProfiles | 395 | 429 | 35 | 10.512 | ||
| TIGRFAM | 398 | 430 | 33 | 1.90E-04 | ||
| Pfam | 399 | 427 | 29 | 0.0017 | ||
| ProSiteProfiles | 430 | 464 | 35 | 10.775 | ||
| TIGRFAM | 433 | 464 | 32 | 9.80E-05 | ||
| Pfam | 433 | 477 | 45 | 3.10E-08 | ||
| ProSiteProfiles | 465 | 499 | 35 | 8.188 | ||
| ProSiteProfiles | 501 | 533 | 33 | 5.086 | ||
| ProSiteProfiles | 534 | 568 | 35 | 5.108 | ||
| ProSiteProfiles | 641 | 675 | 35 | 5.514 | ||
| SMART | 685 | 764 | 80 | 1.20E-09 | ||
| ProSiteProfiles | 688 | 764 | 77 | 12.531 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v0231930.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0231930.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.