Domain Predictions — View

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SM00463

Source: SMART

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 26

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0018339.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] gi\|15237740\|ref\|NP_200680.1\|	Domains IPR002625 IPR013899 PF01713 PF08590 PS50828 PTHR13308 PTHR13308:SF22 SM00463 SM01162 SSF160443	10
Lj0g3v0059929.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi\|356532365\|ref\|XP_003534744.1\|	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 IPR033443 PF13041 PF13812 PF17177 PS50828 PS51375 PTHR24015 PTHR24015:SF437 SM00463 SSF48452 TIGR00756	15
Lj0g3v0059959.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi\|356532361\|ref\|XP_003534742.1\|	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 IPR033443 PF01535 PF13041 PF17177 PS50828 PS51375 PTHR24015 PTHR24015:SF437 SM00463 SSF48452 TIGR00756 mobidb-lite	16
Lj0g3v0258519.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pentatricopeptide repeat-containing protein [Medicago truncatula] gi\|357502615\|ref\|XP_003621596.1\|	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 PF01535 PF13041 PF13812 PS50828 PS51375 PTHR24015 PTHR24015:SF366 SM00463 SSF160443 SSF48452 TIGR00756 mobidb-lite	16
Lj1g3v0449040.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like [Glycine max] gi\|356516744\|ref\|XP_003527053.1\|	Domains IPR002625 PS50828 SM00463 SSF160443	4
Lj1g3v2908510.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Smr protein/MutS2 C-terminal [Medicago truncatula] gi\|124359484\|gb\|ABN05922.1\|	Domains IPR002625 IPR013899 PF01713 PF08590 PS50828 PTHR13308 SM00463 SM01162 SSF160443 mobidb-lite	10
Lj4g3v0109500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 IPR033443 PF01535 PF12854 PF13041 PF17177 PS50828 PS51375 PTHR24015 PTHR24015:SF437 SM00463 SSF48452 TIGR00756 mobidb-lite	17
Lj4g3v0231930.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial-like [Cicer arietinum] gi\|502141840\|ref\|XP_004504664.1\|	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 PF01535 PF13041 PS50828 PS51375 PTHR24015 PTHR24015:SF326 SM00463 TIGR00756	12
Lj4g3v0451120.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: mutS2 protein-like isoform 1 [Glycine max] gi\|356521349\|ref\|XP_003529319.1\|	Domains Coil G3DSA:3.40.50.300 IPR000432 IPR002625 IPR005747 IPR007696 IPR027417 PF00488 PF01713 PIRSF005814 PS00486 PS50828 PTHR11361 PTHR11361:SF14 SM00463 SM00533 SM00534 SSF160443 SSF48334 SSF52540 mobidb-lite	21
Lj4g3v0451120.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: mutS2 protein-like isoform 1 [Glycine max] gi\|356521349\|ref\|XP_003529319.1\|	Domains Coil G3DSA:3.40.50.300 IPR000432 IPR002625 IPR005747 IPR007696 IPR027417 PF00488 PF01713 PIRSF005814 PS00486 PS50828 PTHR11361 PTHR11361:SF14 SM00463 SM00533 SM00534 SSF160443 SSF48334 SSF52540 mobidb-lite	21
Lj4g3v1584860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like [Cicer arietinum] gi\|502152195\|ref\|XP_004508810.1\|	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 PF01535 PF13041 PF13812 PS50828 PS51375 PTHR24015 PTHR24015:SF726 SM00463 SignalP-TM_GRAM_POSITIVE TIGR00756 mobidb-lite	15
Lj5g3v2258310.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: pentatricopeptide repeat-containing protein At2g17033-like [Glycine max] gi\|356574131\|ref\|XP_003555205.1\|	Domains Coil IPR002625 IPR002885 PF01535 PS50828 PTHR24015 PTHR24015:SF537 SM00463 SSF160443 TIGR00756	10
Lj6g3v1722680.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi\|356532361\|ref\|XP_003534742.1\|	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 IPR033443 PF01535 PF13041 PF17177 PS50828 PS51375 PTHR24015 PTHR24015:SF437 SM00463 SSF48452 TIGR00756 mobidb-lite	16
LotjaGi1g1v0188000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pentatricopeptide repeat-containing protein family; TAIR: AT1G18900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp\|Q8GYP6\|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900; TrEMBL-Plants: tr\|A0A151S797\|A0A151S797_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi1g1v0188000	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 IPR036063 NON_CYTOPLASMIC_DOMAIN PF01535 PF12854 PF13041 PS50828 PS51375 PTHR47447 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00463 SSF160443 SSF81901 SignalP-TM TIGR00756 mobidb-lite	22
LotjaGi1g1v0372100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Smr domain-containing protein; TAIR: AT2G26280.1 CTC-interacting domain 7; Swiss-Prot: sp\|O64843\|CID7_ARATH Polyadenylate-binding protein-interacting protein 7; TrEMBL-Plants: tr\|A0A0L9UH72\|A0A0L9UH72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372100	Domains G3DSA:3.30.1370.110 IPR002625 IPR013899 IPR036063 IPR041806 PF08590 PTHR46651 PTHR46651:SF1 SM00463 SM01162 SSF160443 cd14371	12
LotjaGi1g1v0492900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Smr (Small MutS-related) domain protein; TAIR: AT5G23520.1 smr (Small MutS Related) domain-containing protein; Swiss-Prot: sp\|Q86UW6\|N4BP2_HUMAN NEDD4-binding protein 2; TrEMBL-Plants: tr\|K7LFV6\|K7LFV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0492900	Domains G3DSA:3.30.1370.110 IPR002625 IPR013899 IPR036063 PF01713 PF08590 PS50828 PTHR47812 SM00463 SM01162 SSF160443 mobidb-lite	12
LotjaGi1g1v0521700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G31400.1 s uncoupled 1; Swiss-Prot: sp\|Q9SIC9\|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; TrEMBL-Plants: tr\|G7KS10\|G7KS10_MEDTR PPR containing plant protein; Found in the gene: LotjaGi1g1v0521700	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 IPR036063 PF01535 PF13041 PF13812 PS50828 PS51375 PTHR46128 SM00463 SSF160443 SSF48452 TIGR00756 mobidb-lite	16
LotjaGi4g1v0021300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp\|Q9SAK0\|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr\|A0A072UP25\|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 PF01535 PF13041 PS50828 PS51375 PTHR46128 SM00463 TIGR00756	11
LotjaGi4g1v0021300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp\|Q9SAK0\|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr\|A0A072UP25\|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 PF01535 PF13041 PS50828 PS51375 PTHR46128 SM00463 TIGR00756	11
LotjaGi4g1v0021300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp\|Q9SAK0\|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr\|A0A072UP25\|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 PF01535 PF13041 PS50828 PS51375 PTHR46128 SM00463 TIGR00756	11
LotjaGi4g1v0055400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA mismatch repair protein MutS2; TAIR: AT1G65070.2 DNA mismatch repair protein MutS, type 2; Swiss-Prot: sp\|P73625\|MUTS2_SYNY3 Endonuclease MutS2; TrEMBL-Plants: tr\|I1KLI9\|I1KLI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055400	Domains Coil G3DSA:3.30.1370.110 G3DSA:3.40.50.300 IPR000432 IPR002625 IPR005747 IPR007696 IPR027417 IPR036063 IPR036187 PF00488 PF01713 PIRSF005814 PS00486 PS50828 PTHR11361 PTHR11361:SF14 SM00463 SM00533 SM00534 SSF160443 SSF48334 SSF52540 mobidb-lite	24
LotjaGi4g1v0242000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G74850.1 plastid transcriptionally active 2; Swiss-Prot: sp\|Q9S7Q2\|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; TrEMBL-Plants: tr\|K7MKT2\|K7MKT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0242000	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 PF01535 PF13041 PF13812 PS50828 PS51375 PTHR46128 SM00463 SignalP-TM TIGR00756 mobidb-lite	14
LotjaGi5g1v0048800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Smr domain-containing protein; TAIR: AT2G26280.1 CTC-interacting domain 7; Swiss-Prot: sp\|O64843\|CID7_ARATH Polyadenylate-binding protein-interacting protein 7; TrEMBL-Plants: tr\|A0A072VDP3\|A0A072VDP3_MEDTR Smr (Small MutS-related) domain protein; Found in the gene: LotjaGi5g1v0048800	Domains Coil G3DSA:3.30.1370.110 IPR002625 IPR013899 IPR036063 IPR041806 PF01713 PF08590 PS50828 PTHR46651 PTHR46651:SF1 SM00463 SM01162 SSF160443 cd14371 mobidb-lite	16
LotjaGi5g1v0351300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pentatricopeptide repeat-containing protein; TAIR: AT2G17033.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp\|Q8GWA9\|PP157_ARATH Pentatricopeptide repeat-containing protein At2g17033; TrEMBL-Plants: tr\|A0A1J7HIQ9\|A0A1J7HIQ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351300	Domains Coil G3DSA:1.25.40.10 G3DSA:3.30.1370.110 IPR002625 IPR002885 IPR011990 IPR036063 PF01535 PS50828 PTHR46128 SM00463 SSF160443 TIGR00756	13
LotjaGi6g1v0113600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Smr domain-containing protein, putative; TAIR: AT5G58720.1 smr (Small MutS Related) domain-containing protein; Swiss-Prot: sp\|O65573\|Y5872_ARATH SMR domain-containing protein At5g58720; TrEMBL-Plants: tr\|A0A1J7H576\|A0A1J7H576_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0113600	Domains G3DSA:3.30.1370.110 IPR002625 IPR013899 IPR036063 PF01713 PF08590 PS50828 PTHR47676 SM00463 SM01162 SSF160443 mobidb-lite	12
LotjaGi6g1v0283400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pentatricopeptide repeat-containing protein; TAIR: AT4G16390.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp\|Q8GWE0\|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic; TrEMBL-Plants: tr\|I1L028\|I1L028_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0283400	Domains G3DSA:1.25.40.10 IPR002625 IPR002885 IPR011990 IPR033443 NON_CYTOPLASMIC_DOMAIN PF13041 PF13812 PF17177 PS50828 PS51375 PTHR47447 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00463 SignalP-TM TIGR00756 mobidb-lite	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	3.85