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Lj4g3v0387230.1

Overview

Field Value
Gene ID Lj4g3v0387230
Transcript ID Lj4g3v0387230.1
Related isoforms 5
Lotus japonicus genome version MG20 v3.0
Description HVA22-like protein a [Medicago truncatula] gi|357476185|ref|XP_003608378.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12300
1 302 302 3.60E-84
IPR004345
PANTHER
PTHR12300:SF43
1 302 302 3.60E-84 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 19 19 – –
Pfam
PF03134
2 75 74 2.60E-17
IPR004345
TMHMM
TMhelix
19 36 18 – –
Phobius
TRANSMEMBRANE
20 36 17 – –
Phobius
CYTOPLASMIC_DOMAIN
37 47 11 – –
Phobius
TRANSMEMBRANE
48 69 22 – –
TMHMM
TMhelix
51 73 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
70 388 319 – –
SUPERFAMILY
SSF57667
209 258 50 1.72E-09 –
SMART
SM00451
220 254 35 0.048
IPR003604
Pfam
PF12874
223 247 25 1.10E-06 –
SMART
SM00355
223 247 25 7.6
IPR015880
SUPERFAMILY
SSF57667
337 379 43 7.67E-09 –
SMART
SM00451
348 382 35 0.062
IPR003604
SMART
SM00355
351 375 25 0.13
IPR015880
Pfam
PF12874
352 375 24 5.60E-09 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj4g3v0387230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0387230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.